unsigned int memory::get_last_address(unsigned int funId, const application_managerRef AppMgr) const
{
const std::set<unsigned int> calledSet = AppMgr->CGetCallGraphManager()->get_called_by(funId);
const std::map<unsigned int, memory_symbolRef> & internalVars = (internal.find(funId)->second);
unsigned int maxAddress = 0;
for (std::map<unsigned int, memory_symbolRef>::const_iterator
itr = internalVars.begin(), end = internalVars.end(); itr != end; ++itr)
{
unsigned int var = itr->first;
if (!is_private_memory(var) && !has_parameter_base_address(var, funId) && has_base_address(var))
{
maxAddress = std::max(maxAddress, itr->second->get_address() + tree_helper::size(TreeM, var) / 8);
}
}
if (AppMgr->hasToBeInterfaced(funId))
{
const std::map<unsigned int, memory_symbolRef> & paramsVar = get_function_parameters(funId);
for (std::map<unsigned int, memory_symbolRef>::const_iterator itr = paramsVar.begin(),
end = paramsVar.end(); itr != end; ++itr)
{
unsigned int var = itr->first;
maxAddress = std::max(maxAddress, itr->second->get_address() + tree_helper::size(TreeM, var) / 8);
}
}
for (std::set<unsigned int>::const_iterator
Itr = calledSet.begin(), End = calledSet.end(); Itr != End; ++Itr)
{
if (not AppMgr->hasToBeInterfaced(*Itr))
{
maxAddress = std::max(get_last_address(*Itr, AppMgr), maxAddress);
}
}
return maxAddress;
}
bool ESHDFIonsParser::put(xmlNodePtr cur)
{
//add basic attributes of the speciesset
SpeciesSet& tspecies(ref_.getSpeciesSet());
int icharge= tspecies.addAttribute("charge");//charge_tag);
int iatnumber= tspecies.addAttribute(atomic_number_tag);
int membersize= tspecies.addAttribute("membersize");
int massind= tspecies.addAttribute(mass_tag);
if(myComm->rank()==0 && hfile_id>=-1)
readESHDF();
if(myComm->size()==1)
return true;
int nspecies=tspecies.getTotalNum();
int natoms=ref_.getTotalNum();
ostringstream o;
if(myComm->rank()==0)
{
int i=0;
for(; i<nspecies-1; ++i)
o<<tspecies.speciesName[i]<<",";
o<<tspecies.speciesName[i];
}
TinyVector<int,3> bsizes(nspecies,natoms,o.str().size()+1);
myComm->bcast(bsizes);
//send the names: UGLY!!!!
nspecies=bsizes[0];
char *species_names=new char[bsizes[2]];
if(myComm->rank()==0)
snprintf(species_names, bsizes[2], "%s",o.str().c_str());
myComm->bcast(species_names,bsizes[2]);
if(myComm->rank())
{
vector<string> vlist;
parsewords(species_names,vlist);
for(int i=0; i<vlist.size(); ++i)
tspecies.addSpecies(vlist[i]);
//create natoms particles
ref_.create(bsizes[1]);
}
delete [] species_names;
ParticleSet::Tensor_t lat(ref_.Lattice.R);
ParticleSet::Buffer_t pbuffer;
for(int i=0; i<tspecies.numAttributes(); ++i)
pbuffer.add(tspecies.d_attrib[i]->begin(),tspecies.d_attrib[i]->end());
pbuffer.add(lat.begin(),lat.end());
pbuffer.add(get_first_address(ref_.R),get_last_address(ref_.R));
pbuffer.add(ref_.GroupID.begin(),ref_.GroupID.end());
myComm->bcast(pbuffer);
ref_.R.InUnit=PosUnit::CartesianUnit;
if(myComm->rank())
{
pbuffer.rewind();
for(int i=0; i<tspecies.numAttributes(); ++i)
pbuffer.get(tspecies.d_attrib[i]->begin(),tspecies.d_attrib[i]->end());
pbuffer.get(lat.begin(),lat.end());
pbuffer.get(get_first_address(ref_.R),get_last_address(ref_.R));
pbuffer.get(ref_.GroupID.begin(),ref_.GroupID.end());
ref_.Lattice.set(lat);
}
return true;
}