extern eventq_t
get_sendq(tcconf_section_t *cf, char *q)
{
eventq_t eq = eventq_new(NULL);
char *qname = get_qname(cf);
attachq(eq, qname, q, EVENTQ_SEND);
free(qname);
return eq;
}
std::string record_to_string(const bam_hdr_t* header, const bam1_t* record) {
std::string reference_name(record->core.tid >= 0 ? header->target_name[record->core.tid] : "*");
std::string mate_reference_name(record->core.mtid >= 0 ? header->target_name[record->core.mtid] : "*");
std::stringstream s;
s << get_qname(record)
<< "\t" << record->core.flag
<< "\t" << reference_name
<< "\t" << record->core.pos + 1
<< "\t" << mate_reference_name
<< "\t" << record->core.mpos + 1
<< "\t" << record->core.isize;
return s.str();
}
extern eventq_t
get_recvq(tcconf_section_t *cf, ...)
{
eventq_t eq = eventq_new(tcref);
char *qname = get_qname(cf), *q;
va_list args;
va_start(args, cf);
while((q = va_arg(args, char *)) != NULL)
attachq(eq, qname, q, EVENTQ_RECV);
va_end(args);
free(qname);
return eq;
}