main()
{
char *p = NULL;
char *q = NULL;
p = get_str();
printf("%s %d\n", p, p);
q = get_str2();
printf("%s %d\n", q, q);
}
int
main(int argc, char **argv) {
char line[MAX_STR];
char pgm_desc[MAX_STR];
char s_name0[MAX_STR], s_name1[MAX_STR];
char s_desc0[MAX_STR], s_desc1[MAX_STR];
int p0_beg, p1_beg, p0_end, p1_end;
int open_plt = 0;
int copt;
/* check options */
while ((copt = getopt(argc, argv, "BZ:")) != -1) {
switch (copt) {
case 'B':
have_bits = 1;
break;
case 'Z':
sscanf(optarg, "%ld", &zdb_size);
have_zdb = 1;
break;
case '?':
default:
fprintf(stderr," usage - ps_lav -B -Z db_size\n");
}
}
while (fgets(line,sizeof(line), stdin)!=NULL) {
if (line[0] == '#' || line[0] == '\n') continue;
else {
switch(line[0]) {
case 'd':
get_str(stdin, pgm_desc, sizeof(pgm_desc));
break;
case 'h':
get_str2(stdin,
s_desc0, sizeof(s_desc0),
s_desc1, sizeof(s_desc1));
break;
case 's':
get_seq_info(stdin,
s_name0, sizeof(s_name0), &p0_beg, &p0_end,
s_name1, sizeof(s_name1), &p1_beg, &p1_end);
g_n0 = p0_end - p0_beg + 1;
g_n1 = p1_end - p1_beg + 1;
break;
case 'a':
if (!open_plt) {
openplt(g_n0, g_n1, p0_beg, p1_beg, s_desc0, s_desc1);
if ((g_n0 == g_n1) && (p0_beg == p1_beg) && (p0_end == p0_end) &&
strcmp(s_name0, s_name1) == 0) {
drawdiag(p0_end-p0_beg + 1, p1_end - p1_beg + 1);
}
open_plt = 1;
}
do_alignment(stdin, p0_beg, p1_beg);
break;
}
}
}
if (!open_plt) {
openplt(g_n0, g_n1, p0_beg, p1_beg, s_desc0, s_desc1);
if ((g_n0 == g_n1) && (p0_beg == p1_beg) && (p0_end == p0_end) &&
strcmp(s_name0, s_name1) == 0) {
drawdiag(p0_end-p0_beg + 1, p1_end - p1_beg + 1);
}
open_plt = 1;
}
closeplt();
exit(0);
}
