static int gt_condenser_runner(int argc, const char **argv, int parsed_args,
void *tool_arguments, GT_UNUSED GtError *err)
{
GtToolbox *condenser_toolbox = tool_arguments;
GtTool *tool;
int had_err = 0;
char **nargv = NULL;
gt_error_check(err);
gt_assert(condenser_toolbox);
/* get condenser tools */
tool = gt_toolbox_get_tool(condenser_toolbox, argv[parsed_args]);
if (!tool) {
gt_error_set(err, "condenser tool '%s' not found; option -help lists "
"possible tools", argv[parsed_args]);
had_err = -1;
}
/* call condenser tool */
if (!had_err) {
gt_assert(tool);
nargv = gt_cstr_array_prefix_first(argv + parsed_args,
gt_error_get_progname(err));
gt_error_set_progname(err, nargv[0]);
had_err = gt_tool_run(tool, argc - parsed_args, (const char**) nargv, err);
}
/* free */
gt_cstr_array_delete(nargv);
return had_err;
}
static int gt_cge_runner(int argc, const char **argv, int parsed_args,
void *tool_arguments, GtError *err)
{
GtToolbox *index_toolbox = tool_arguments;
GtToolfunc toolfunc;
GtTool *tool = NULL;
char **nargv = NULL;
int had_err = 0;
gt_error_check(err);
gt_assert(index_toolbox != NULL);
/* determine tool */
if (!gt_toolbox_has_tool(index_toolbox, argv[parsed_args]))
{
gt_error_set(err, "congruence tool '%s' not found; option -help lists "
"possible tools", argv[parsed_args]);
had_err = -1;
}
/* call sub-tool */
if (!had_err)
{
if (!(toolfunc = gt_toolbox_get(index_toolbox, argv[parsed_args])))
{
tool = gt_toolbox_get_tool(index_toolbox, argv[parsed_args]);
gt_assert(tool != NULL);
}
nargv = gt_cstr_array_prefix_first(argv + parsed_args,
gt_error_get_progname(err));
gt_error_set_progname(err, nargv[0]);
if (toolfunc != NULL)
had_err = toolfunc(argc - parsed_args, (const char**) nargv, err);
else
had_err = gt_tool_run(tool, argc - parsed_args, (const char**) nargv,
err);
}
gt_cstr_array_delete(nargv);
return had_err;
}
static int gt_dev_runner(int argc, const char **argv, int parsed_args,
void *tool_arguments, GtError *err)
{
GtToolbox *dev_toolbox = tool_arguments;
GtToolfunc toolfunc;
GtTool *tool = NULL;
int had_err = 0;
char **nargv = NULL;
gt_error_check(err);
gt_assert(dev_toolbox);
/* get development tools */
if (!gt_toolbox_has_tool(dev_toolbox, argv[parsed_args])) {
gt_error_set(err, "development tool '%s' not found; option -help lists "
"possible tools", argv[parsed_args]);
had_err = -1;
}
/* call development tool */
if (!had_err) {
if (!(toolfunc = gt_toolbox_get(dev_toolbox, argv[parsed_args]))) {
tool = gt_toolbox_get_tool(dev_toolbox, argv[parsed_args]);
gt_assert(tool);
}
nargv = gt_cstr_array_prefix_first(argv + parsed_args,
gt_error_get_progname(err));
gt_error_set_progname(err, nargv[0]);
if (toolfunc)
had_err = toolfunc(argc - parsed_args, (const char**) nargv, err);
else
had_err = gt_tool_run(tool, argc - parsed_args, (const char**) nargv,
err);
}
/* free */
gt_cstr_array_delete(nargv);
return had_err;
}
int gtr_run(GtR *gtr, int argc, const char **argv, GtError *err)
{
GtToolfunc toolfunc;
GtTool *tool = NULL;
char **nargv = NULL;
void *mem, *map;
int had_err = 0;
gt_error_check(err);
gt_assert(gtr);
if (gtr->debug)
enable_logging(gt_str_get(gtr->debugfp), >r->logfp);
if (gtr->quiet)
gt_warning_disable();
gtr->seed = gt_ya_rand_init(gtr->seed);
gt_log_log("seed=%u", gtr->seed);
if (gtr->list)
return list_tools(gtr);
if (gt_str_length(gtr->manoutdir) > 0)
return create_manpages(gtr, gt_str_get(gtr->manoutdir), err);
if (gtr->check64bit)
return check64bit();
if (gtr->test)
return run_tests(gtr, err);
if (gt_str_length(gtr->testspacepeak)) {
mem = gt_malloc(1 << 26); /* alloc 64 MB */;
map = gt_fa_xmmap_read(gt_str_get(gtr->testspacepeak), NULL);
gt_fa_xmunmap(map);
gt_free(mem);
}
if (argc == 0 && !gtr->interactive) {
gt_error_set(err, "neither tool nor script specified; option -help lists "
"possible tools");
had_err = -1;
}
if (!had_err && argc) {
if (!gtr->tools || !gt_toolbox_has_tool(gtr->tools, argv[0])) {
/* no tool found -> try to open script */
if (gt_file_exists(argv[0])) {
/* export script */
gt_lua_set_script_dir(gtr->L, argv[0]);
/* run script */
nargv = gt_cstr_array_prefix_first(argv, gt_error_get_progname(err));
gt_lua_set_arg(gtr->L, nargv[0], (const char**) nargv+1);
if (luaL_dofile(gtr->L, argv[0])) {
/* error */
gt_assert(lua_isstring(gtr->L, -1)); /* error message on top */
gt_error_set(err, "could not execute script %s",
lua_tostring(gtr->L, -1));
had_err = -1;
lua_pop(gtr->L, 1); /* pop error message */
}
}
else {
/* neither tool nor script found */
gt_error_set(err, "neither tool nor script '%s' found; option -help "
"lists possible tools", argv[0]);
had_err = -1;
}
}
else {
/* run tool */
if (!(toolfunc = gt_toolbox_get(gtr->tools, argv[0]))) {
tool = gt_toolbox_get_tool(gtr->tools, argv[0]);
gt_assert(tool);
}
nargv = gt_cstr_array_prefix_first(argv, gt_error_get_progname(err));
gt_error_set_progname(err, nargv[0]);
if (toolfunc)
had_err = toolfunc(argc, (const char**) nargv, err);
else
had_err = gt_tool_run(tool, argc, (const char**) nargv, err);
}
}
gt_cstr_array_delete(nargv);
if (!had_err && gtr->interactive) {
gt_showshortversion(gt_error_get_progname(err));
gt_lua_set_arg(gtr->L, gt_error_get_progname(err), argv);
run_interactive_lua_interpreter(gtr->L);
}
if (had_err)
return EXIT_FAILURE;
return EXIT_SUCCESS;
}
