Ejemplos de gt_desc_buffer_new en C++ (Cpp)

Ejemplo n.º 1

Archivo: seq_iterator_sequence_buffer.c Proyecto: oeigenbrod/genometools

GtSeqIterator* gt_seq_iterator_sequence_buffer_new_with_buffer(
                                                       GtSequenceBuffer *buffer)
{
  GtSeqIterator *si;
  GtSeqIteratorSequenceBuffer *seqit;
  si = gt_seq_iterator_create(gt_seq_iterator_sequence_buffer_class());
  seqit = gt_seq_iterator_sequence_buffer_cast(si);
  GT_INITARRAY(&seqit->sequencebuffer, GtUchar);
  seqit->descptr = gt_desc_buffer_new();
  seqit->fb = gt_sequence_buffer_ref(buffer);
  gt_sequence_buffer_set_desc_buffer(seqit->fb, seqit->descptr);
  seqit->exhausted = false;
  seqit->unitnum = 0;
  seqit->withsequence = true;
  seqit->currentread = 0;
  seqit->maxread = 0;
  return si;
}

Ejemplo n.º 2

Archivo: desc_buffer.c Proyecto: AlexWoroschilow/uni_hamburg

int gt_desc_buffer_unit_test(GtError *err)
{
  GtDescBuffer *s;
  static char *strs[] = { "foo", "bar", "baz"};
  const char *ret;
  int had_err = 0;
  GtUword i, j;
  gt_error_check(err);

  s = gt_desc_buffer_new();
  ret = gt_desc_buffer_get_next(s);
  gt_ensure(strcmp(ret, "") == 0);
  gt_ensure(ret == s->buf);
  gt_ensure(gt_desc_buffer_length(s) == 0);
  gt_desc_buffer_delete(s);

  s = gt_desc_buffer_new();
  for (i = 0; i < strlen(strs[0]); i++) {
    gt_desc_buffer_append_char(s, strs[0][i]);
  }
  gt_desc_buffer_finish(s);
  ret = gt_desc_buffer_get_next(s);
  gt_ensure(strcmp(ret, strs[0]) == 0);
  gt_ensure(ret == s->buf);
  gt_ensure(gt_desc_buffer_length(s) == 4);
  gt_desc_buffer_delete(s);

  s = gt_desc_buffer_new();
  for (j = 0; j < 2; j++) {
    for (i = 0; i < strlen(strs[j]); i++) {
      gt_desc_buffer_append_char(s, strs[j][i]);
    }
    gt_desc_buffer_finish(s);
  }
  ret = gt_desc_buffer_get_next(s);
  gt_ensure(strcmp(ret, strs[0]) == 0);
  gt_ensure(ret == s->buf);
  ret = gt_desc_buffer_get_next(s);
  gt_ensure(strcmp(ret, strs[1]) == 0);
  gt_ensure(ret == s->buf+4);
  gt_ensure(gt_desc_buffer_length(s) == 8);
  gt_desc_buffer_delete(s);

  s = gt_desc_buffer_new();
  for (j = 0; j < 3; j++) {
    for (i = 0; i < strlen(strs[j]); i++) {
      gt_desc_buffer_append_char(s, strs[j][i]);
    }
    gt_desc_buffer_finish(s);
  }
  ret = gt_desc_buffer_get_next(s);
  gt_ensure(strcmp(ret, strs[0]) == 0);
  gt_ensure(ret == s->buf);
  ret = gt_desc_buffer_get_next(s);
  gt_ensure(strcmp(ret, strs[1]) == 0);
  gt_ensure(ret == s->buf+4);
  ret = gt_desc_buffer_get_next(s);
  gt_ensure(strcmp(ret, strs[2]) == 0);
  gt_ensure(ret == s->buf+8);
  gt_ensure(gt_desc_buffer_length(s) == 12);
  gt_desc_buffer_delete(s);

  return had_err;
}