void gt_condenseq_delete(GtCondenseq *condenseq)
{
if (condenseq != NULL) {
GtUword i;
for (i = 0; i < condenseq->ldb_nelems; i++) {
gt_editscript_delete(condenseq->links[i].editscript);
}
for (i = 0; i < condenseq->udb_nelems; i++) {
GT_FREEARRAY(&(condenseq->uniques[i].links), uint32_t);
}
gt_alphabet_delete(condenseq->alphabet);
gt_encseq_delete(condenseq->unique_es);
gt_free(condenseq->buffer);
gt_free(condenseq->filename);
gt_free(condenseq->links);
gt_free(condenseq->orig_ids);
gt_free(condenseq->ubuffer);
gt_free(condenseq->uniques);
gt_intset_delete(condenseq->sdstab);
gt_intset_delete(condenseq->ssptab);
gt_free(condenseq);
}
}
int gt_intset_16_unit_test(GtError *err)
{
int had_err = 0;
GtIntset *is;
GtUword num_of_elems = gt_rand_max(((GtUword) 1) << 10) + 1,
*arr = gt_malloc(sizeof (*arr) * num_of_elems),
stepsize = GT_DIV2(num_of_elems <<4 / num_of_elems),
idx;
size_t is_size;
gt_error_check(err);
arr[0] = gt_rand_max(stepsize) + 1;
for (idx = (GtUword) 1; idx < num_of_elems; ++idx) {
arr[idx] = arr[idx - 1] + gt_rand_max(stepsize) + 1;
}
is_size = gt_intset_16_size_of_rep(arr[num_of_elems - 1], num_of_elems);
if (!had_err) {
if (is_size < (size_t) UINT_MAX) {
is = gt_intset_16_new(arr[num_of_elems - 1], num_of_elems);
for (idx = 0; idx < num_of_elems; idx++) {
gt_intset_16_add(is, arr[idx]);
gt_ensure(idx + 1 == gt_intset_16_size(is));
if (idx < num_of_elems - 1)
gt_ensure(gt_intset_16_get_idx_smallest_geq(is,
arr[idx] + 1) ==
num_of_elems);
}
gt_ensure(gt_intset_16_elems_is_valid(is));
gt_ensure(gt_intset_16_secstart_is_valid(is));
for (idx = 0; !had_err && idx < num_of_elems; idx++) {
if (arr[idx] != 0 && arr[idx - 1] != (arr[idx] - 1)) {
gt_ensure(
gt_intset_16_get_idx_smallest_geq_test(is, arr[idx] - 1) ==
idx);
gt_ensure(
gt_intset_16_get_idx_smallest_geq(is, arr[idx] - 1) ==
idx);
}
gt_ensure(gt_intset_16_get_test(is, idx) == arr[idx]);
gt_ensure(gt_intset_16_get(is, idx) == arr[idx]);
gt_ensure(
gt_intset_16_get_idx_smallest_geq_test(is, arr[idx] + 1) ==
idx + 1);
gt_ensure(
gt_intset_16_get_idx_smallest_geq(is, arr[idx] + 1) ==
idx + 1);
}
if (!had_err)
had_err = gt_intset_unit_test_notinset(is, 0, arr[0] - 1, err);
if (!had_err)
had_err = gt_intset_unit_test_check_seqnum(is, 0, arr[0] - 1, 0, err);
for (idx = (GtUword) 1; !had_err && idx < num_of_elems; idx++) {
had_err = gt_intset_unit_test_notinset(is, arr[idx - 1] + 1,
arr[idx] - 1, err);
if (!had_err)
had_err = gt_intset_unit_test_check_seqnum(is, arr[idx - 1] + 1,
arr[idx] - 1, idx, err);
}
gt_intset_delete(is);
}
}
gt_free(arr);
return had_err;
}