void getIndexedGenomeDescriptionsZoo(char ***retArray, int *retCount, boolean blatOnly)
/* Find out the list of genomes that have blat servers on them. */
{
struct dbDb *dbList = NULL, *db;
int i, count = 0;
char **array;
if(blatOnly)
dbList = hGetBlatIndexedDatabases();
else
dbList = hGetIndexedDatabases();
/* Call zooCount instead of human count */
count = zooCount(dbList);
if (count == 0)
errAbort("No active %s servers in database", (blatOnly ? "blat" : "nib" ));
AllocArray(array, count);
i = 0;
for (db=dbList; db != NULL; db=db->next)
{
/* Get the proper Zoo species omitting combo */
if(strstrNoCase(db->name, "zoo") && !strstrNoCase(db->name,"combo")){
array[i++] = cloneString(db->description);
}
}
dbDbFreeList(&dbList);
*retArray = array;
*retCount = count;
}
void printBlatGenomeListHtml(char *db, char *onChangeText)
/* Prints to stdout the HTML to render a dropdown list
* containing a list of the possible genomes to choose from.
* param db - a database whose genome will be the default genome.
* If NULL, no default selection.
* param onChangeText - Optional (can be NULL) text to pass in
* any onChange javascript. */
{
printSomeGenomeListHtml(db, hGetBlatIndexedDatabases(), onChangeText);
}
void printBlatAssemblyListHtml(char *db)
{
/* Find all the assemblies that pertain to the selected genome
Prints to stdout the HTML to render a dropdown list containing a list of the possible
assemblies to choose from.
param curDb - The assembly (the database name) to choose as selected.
If NULL, no default selection.
*/
struct dbDb *dbList = hGetBlatIndexedDatabases();
printSomeAssemblyListHtml(db, dbList, NULL);
}
void getIndexedGenomeDescriptions(char ***retArray, int *retCount, boolean blatOnly)
/* Find out the list of genomes that have blat servers on them. */
{
struct dbDb *dbList = NULL, *db;
int i, count = 0;
char **array;
if(blatOnly)
dbList = hGetBlatIndexedDatabases();
else
dbList = hGetIndexedDatabases();
count = humanCount(dbList);
if (count == 0)
errAbort("No active %s servers in database", (blatOnly ? "blat" : "nib" ));
AllocArray(array, count);
i = 0;
for (db=dbList; db != NULL; db=db->next)
{
if(sameString("Human", db->organism) && !strstrNoCase(db->name, "zoo"))
array[i++] = cloneString(db->description);
}
dbDbFreeList(&dbList);
*retArray = array;
*retCount = count;
}
