extern "C" void do_calc(void)
{ double g = 9.80;
double sigma = 0.95;
int icount, jcount;
struct timeval tstart_cpu;
// Initialize state variables for GPU calculation.
int &mype = mesh->mype;
int &numpe = mesh->numpe;
//int levmx = mesh->levmx;
size_t &ncells_global = mesh->ncells_global;
size_t &ncells = mesh->ncells;
size_t &ncells_ghost = mesh->ncells_ghost;
vector<int> mpot;
vector<int> mpot_global;
size_t old_ncells = ncells;
size_t old_ncells_global = ncells_global;
size_t new_ncells = 0;
double deltaT = 0.0;
// Main loop.
for (int nburst = 0; nburst < outputInterval && ncycle < niter; nburst++, ncycle++) {
// Define basic domain decomposition parameters for GPU.
old_ncells = ncells;
old_ncells_global = ncells_global;
MPI_Barrier(MPI_COMM_WORLD);
cpu_timer_start(&tstart_cpu);
// Calculate the real time step for the current discrete time step.
deltaT = state->set_timestep(g, sigma);
simTime += deltaT;
cpu_timer_start(&tstart_cpu);
mesh->calc_neighbors_local();
mesh->partition_measure();
// Currently not working -- may need to be earlier?
//if (mesh->have_boundary) {
// state->add_boundary_cells();
//}
// Apply BCs is currently done as first part of gpu_finite_difference and so comparison won't work here
// Execute main kernel
cpu_timer_start(&tstart_cpu);
state->calc_finite_difference(deltaT);
// Size of arrays gets reduced to just the real cells in this call for have_boundary = 0
state->remove_boundary_cells();
cpu_timer_start(&tstart_cpu);
mpot.resize(ncells_ghost);
new_ncells = state->calc_refine_potential(mpot, icount, jcount);
cpu_timer_start(&tstart_cpu);
//int add_ncells = new_ncells - old_ncells;
state->rezone_all(icount, jcount, mpot);
// Clear does not delete mpot, so have to swap with an empty vector to get
// it to delete the mpot memory. This is all to avoid valgrind from showing
// it as a reachable memory leak
//mpot.clear();
vector<int>().swap(mpot);
ncells = new_ncells;
mesh->ncells = new_ncells;
cpu_timer_start(&tstart_cpu);
state->do_load_balance_local(new_ncells);
// XXX
// mesh->proc.resize(ncells);
// if (icount) {
// vector<int> index(ncells);
// mesh->partition_cells(numpe, index, cycle_reorder);
// }
} // End burst loop
double H_sum = state->mass_sum(enhanced_precision_sum);
if (isnan(H_sum)) {
printf("Got a NAN on cycle %d\n",ncycle);
exit(-1);
}
if (mype == 0){
printf("Iteration %3d timestep %lf Sim Time %lf cells %ld Mass Sum %14.12lg Mass Change %12.6lg\n",
ncycle, deltaT, simTime, ncells_global, H_sum, H_sum - H_sum_initial);
}
#ifdef HAVE_GRAPHICS
mesh->x.resize(ncells);
mesh->dx.resize(ncells);
mesh->y.resize(ncells);
mesh->dy.resize(ncells);
mesh->calc_spatial_coordinates(0);
cpu_timer_start(&tstart_cpu);
#ifdef HAVE_MPE
set_mysize(ncells);
set_cell_coordinates(&mesh->x[0], &mesh->dx[0], &mesh->y[0], &mesh->dy[0]);
set_cell_data(&state->H[0]);
set_cell_proc(&mesh->proc[0]);
#endif
#ifdef HAVE_OPENGL
vector<int> &nsizes = mesh->nsizes;
vector<int> &ndispl = mesh->ndispl;
set_mysize(ncells_global);
//vector<spatial_t> x_global;
//vector<spatial_t> dx_global;
//vector<spatial_t> y_global;
//vector<spatial_t> dy_global;
//vector<state_t> H_global;
//vector<int> proc_global;
if (mype == 0) {
x_global.resize(ncells_global);
dx_global.resize(ncells_global);
y_global.resize(ncells_global);
dy_global.resize(ncells_global);
H_global.resize(ncells_global);
proc_global.resize(ncells_global);
}
MPI_Gatherv(&mesh->x[0], nsizes[mype], MPI_SPATIAL_T, &x_global[0], &nsizes[0], &ndispl[0], MPI_SPATIAL_T, 0, MPI_COMM_WORLD);
MPI_Gatherv(&mesh->dx[0], nsizes[mype], MPI_SPATIAL_T, &dx_global[0], &nsizes[0], &ndispl[0], MPI_SPATIAL_T, 0, MPI_COMM_WORLD);
MPI_Gatherv(&mesh->y[0], nsizes[mype], MPI_SPATIAL_T, &y_global[0], &nsizes[0], &ndispl[0], MPI_SPATIAL_T, 0, MPI_COMM_WORLD);
MPI_Gatherv(&mesh->dy[0], nsizes[mype], MPI_SPATIAL_T, &dy_global[0], &nsizes[0], &ndispl[0], MPI_SPATIAL_T, 0, MPI_COMM_WORLD);
MPI_Gatherv(&state->H[0], nsizes[mype], MPI_STATE_T, &H_global[0], &nsizes[0], &ndispl[0], MPI_STATE_T, 0, MPI_COMM_WORLD);
if (view_mode == 0) {
mesh->proc.resize(ncells);
for (size_t ii = 0; ii<ncells; ii++){
mesh->proc[ii] = mesh->mype;
}
MPI_Gatherv(&mesh->proc[0], nsizes[mype], MPI_INT, &proc_global[0], &nsizes[0], &ndispl[0], MPI_INT, 0, MPI_COMM_WORLD);
}
set_cell_coordinates(&x_global[0], &dx_global[0], &y_global[0], &dy_global[0]);
set_cell_data(&H_global[0]);
set_cell_proc(&proc_global[0]);
#endif
set_viewmode(view_mode);
set_circle_radius(circle_radius);
draw_scene();
MPI_Barrier(MPI_COMM_WORLD);
cpu_time_graphics += cpu_timer_stop(tstart_cpu);
#endif
// Output final results and timing information.
if (ncycle >= niter) {
//free_display();
// Get overall program timing.
double elapsed_time = cpu_timer_stop(tstart);
long long mem_used = memstats_memused();
if (mem_used > 0) {
mesh->parallel_memory_output("Memory used ",mem_used, 0);
mesh->parallel_memory_output("Memory peak ",memstats_mempeak(), 0);
mesh->parallel_memory_output("Memory free ",memstats_memfree(), 0);
mesh->parallel_memory_output("Memory available ",memstats_memtotal(), 0);
}
state->output_timing_info(do_cpu_calc, do_gpu_calc, elapsed_time);
mesh->parallel_timer_output("CPU: graphics time was",cpu_time_graphics, 0);
mesh->print_partition_measure();
mesh->print_calc_neighbor_type();
mesh->print_partition_type();
if (mype ==0) {
printf("CPU: rezone frequency \t %8.4f\tpercent\n", (double)mesh->get_cpu_rezone_count()/(double)ncycle*100.0 );
printf("CPU: calc neigh frequency \t %8.4f\tpercent\n", (double)mesh->get_cpu_calc_neigh_count()/(double)ncycle*100.0 );
printf("CPU: load balance frequency \t %8.4f\tpercent\n", (double)mesh->get_cpu_load_balance_count()/(double)ncycle*100.0 );
printf("CPU: refine_smooth_iter per rezone \t %8.4f\t\n", (double)mesh->get_cpu_refine_smooth_count()/(double)mesh->get_cpu_rezone_count() );
}
mesh->terminate();
state->terminate();
delete mesh;
delete state;
L7_Terminate();
exit(0);
} // Complete final output.
}
extern "C" void do_calc(void)
{ double g = 9.80;
double sigma = 0.95;
int icount, jcount;
// Initialize state variables for GPU calculation.
size_t &ncells = mesh->ncells;
vector<int> mpot;
size_t old_ncells = ncells;
size_t new_ncells = 0;
double H_sum = -1.0;
double deltaT = 0.0;
// Main loop.
for (int nburst = 0; nburst < outputInterval && ncycle < niter; nburst++, ncycle++) {
old_ncells = ncells;
// Calculate the real time step for the current discrete time step.
deltaT = state->set_timestep(g, sigma);
simTime += deltaT;
if (mesh->nlft == NULL) mesh->calc_neighbors();
mesh->partition_measure();
// Currently not working -- may need to be earlier?
//if (do_cpu_calc && ! mesh->have_boundary) {
// state->add_boundary_cells(mesh);
//}
// Apply BCs is currently done as first part of gpu_finite_difference and so comparison won't work here
// Execute main kernel
state->calc_finite_difference(deltaT);
// Size of arrays gets reduced to just the real cells in this call for have_boundary = 0
state->remove_boundary_cells();
mpot.resize(ncells);
new_ncells = state->calc_refine_potential(mpot, icount, jcount);
// Resize the mesh, inserting cells where refinement is necessary.
state->rezone_all(icount, jcount, mpot);
mpot.clear();
mesh->ncells = new_ncells;
ncells = new_ncells;
mesh->proc.resize(ncells);
if (icount)
{ vector<int> index(ncells);
mesh->partition_cells(numpe, index, cycle_reorder);
state->state_reorder(index);
state->memory_reset_ptrs();
}
mesh->ncells = ncells;
}
H_sum = state->mass_sum(enhanced_precision_sum);
if (isnan(H_sum)) {
printf("Got a NAN on cycle %d\n",ncycle);
exit(-1);
}
printf("Iteration %3d timestep %lf Sim Time %lf cells %ld Mass Sum %14.12lg Mass Change %12.6lg\n",
ncycle, deltaT, simTime, ncells, H_sum, H_sum - H_sum_initial);
struct timeval tstart_cpu;
cpu_timer_start(&tstart_cpu);
#ifdef HAVE_GRAPHICS
mesh->calc_spatial_coordinates(0);
set_mysize(ncells);
set_viewmode(view_mode);
set_cell_coordinates(&mesh->x[0], &mesh->dx[0], &mesh->y[0], &mesh->dy[0]);
set_cell_data(&state->H[0]);
set_cell_proc(&mesh->proc[0]);
set_circle_radius(circle_radius);
draw_scene();
#endif
cpu_time_graphics += cpu_timer_stop(tstart_cpu);
// Output final results and timing information.
if (ncycle >= niter) {
//free_display();
// Get overall program timing.
double elapsed_time = cpu_timer_stop(tstart);
long long mem_used = memstats_memused();
//if (mem_used > 0) {
printf("Memory used %lld kB\n",mem_used);
printf("Memory peak %lld kB\n",memstats_mempeak());
printf("Memory free %lld kB\n",memstats_memfree());
printf("Memory available %lld kB\n",memstats_memtotal());
//}
state->output_timing_info(do_cpu_calc, do_gpu_calc, elapsed_time);
printf("CPU: graphics time was\t %8.4f\ts\n", cpu_time_graphics );
mesh->print_partition_measure();
mesh->print_calc_neighbor_type();
mesh->print_partition_type();
printf("CPU: rezone frequency \t %8.4f\tpercent\n", (double)mesh->get_cpu_rezone_count()/(double)ncycle*100.0 );
printf("CPU: calc neigh frequency \t %8.4f\tpercent\n", (double)mesh->get_cpu_calc_neigh_count()/(double)ncycle*100.0 );
printf("CPU: refine_smooth_iter per rezone \t %8.4f\t\n", (double)mesh->get_cpu_refine_smooth_count()/(double)mesh->get_cpu_rezone_count() );
mesh->terminate();
state->terminate();
delete mesh;
delete state;
exit(0);
} // Complete final output.
}
int main(int argc, char **argv) {
// Process command-line arguments, if any.
int mype=0;
int numpe=0;
parseInput(argc, argv);
L7_Init(&mype, &numpe, &argc, argv);
#if 1 // SKG make things sane for debugging
signal(SIGSEGV, SIG_DFL);
#endif
struct timeval tstart_setup;
cpu_timer_start(&tstart_setup);
real_t circ_radius = 6.0;
// Scale the circle appropriately for the mesh size.
circ_radius = circ_radius * (real_t) nx / 128.0;
int boundary = 1;
int parallel_in = 1;
// figure out the max number of threads that can be spawned
if (0 == mype) {
int nt = omp_get_max_threads();
printf("--- num openmp threads: %d\n", nt);
fflush(stdout);
}
mesh = new Mesh(nx, ny, levmx, ndim, boundary, parallel_in, do_gpu_calc);
if (DEBUG) {
//if (mype == 0) mesh->print();
char filename[10];
sprintf(filename,"out%1d",mype);
mesh->fp=fopen(filename,"w");
//mesh->print_local();
}
mesh->init(nx, ny, circ_radius, initial_order, do_gpu_calc);
size_t &ncells = mesh->ncells;
size_t &ncells_global = mesh->ncells_global;
int &noffset = mesh->noffset;
state = new State(mesh);
state->init(do_gpu_calc);
vector<int> &nsizes = mesh->nsizes;
vector<int> &ndispl = mesh->ndispl;
vector<spatial_t> &x = mesh->x;
vector<spatial_t> &dx = mesh->dx;
vector<spatial_t> &y = mesh->y;
vector<spatial_t> &dy = mesh->dy;
nsizes.resize(numpe);
ndispl.resize(numpe);
int ncells_int = ncells;
MPI_Allgather(&ncells_int, 1, MPI_INT, &nsizes[0], 1, MPI_INT, MPI_COMM_WORLD);
ndispl[0]=0;
for (int ip=1; ip<numpe; ip++){
ndispl[ip] = ndispl[ip-1] + nsizes[ip-1];
}
noffset = ndispl[mype];
state->resize(ncells);
state->fill_circle(circ_radius, 100.0, 7.0);
x.clear();
dx.clear();
y.clear();
dy.clear();
// Kahan-type enhanced precision sum implementation.
double H_sum = state->mass_sum(enhanced_precision_sum);
if (mype == 0) printf ("Mass of initialized cells equal to %14.12lg\n", H_sum);
H_sum_initial = H_sum;
double cpu_time_main_setup = cpu_timer_stop(tstart_setup);
mesh->parallel_timer_output("CPU: setup time time was",cpu_time_main_setup, 0);
long long mem_used = memstats_memused();
if (mem_used > 0) {
mesh->parallel_memory_output("Memory used in startup ",mem_used, 0);
mesh->parallel_memory_output("Memory peak in startup ",memstats_mempeak(), 0);
mesh->parallel_memory_output("Memory free at startup ",memstats_memfree(), 0);
mesh->parallel_memory_output("Memory available at startup ",memstats_memtotal(), 0);
}
if (mype == 0) {
printf("Iteration 0 timestep n/a Sim Time 0.0 cells %ld Mass Sum %14.12lg\n", ncells_global, H_sum);
}
for (int i = 0; i < MESH_COUNTER_SIZE; i++){
mesh->cpu_counters[i]=0;
}
for (int i = 0; i < MESH_TIMER_SIZE; i++){
mesh->cpu_timers[i]=0.0;
}
#ifdef HAVE_GRAPHICS
#ifdef HAVE_OPENGL
set_mysize(ncells_global);
//vector<state_t> H_global;
//vector<spatial_t> x_global;
//vector<spatial_t> dx_global;
//vector<spatial_t> y_global;
//vector<spatial_t> dy_global;
//vector<int> proc_global;
if (mype == 0){
H_global.resize(ncells_global);
x_global.resize(ncells_global);
dx_global.resize(ncells_global);
y_global.resize(ncells_global);
dy_global.resize(ncells_global);
proc_global.resize(ncells_global);
}
MPI_Gatherv(&x[0], nsizes[mype], MPI_SPATIAL_T, &x_global[0], &nsizes[0], &ndispl[0], MPI_SPATIAL_T, 0, MPI_COMM_WORLD);
MPI_Gatherv(&dx[0], nsizes[mype], MPI_SPATIAL_T, &dx_global[0], &nsizes[0], &ndispl[0], MPI_SPATIAL_T, 0, MPI_COMM_WORLD);
MPI_Gatherv(&y[0], nsizes[mype], MPI_SPATIAL_T, &y_global[0], &nsizes[0], &ndispl[0], MPI_SPATIAL_T, 0, MPI_COMM_WORLD);
MPI_Gatherv(&dy[0], nsizes[mype], MPI_SPATIAL_T, &dy_global[0], &nsizes[0], &ndispl[0], MPI_SPATIAL_T, 0, MPI_COMM_WORLD);
MPI_Gatherv(&state->H[0], nsizes[mype], MPI_STATE_T, &H_global[0], &nsizes[0], &ndispl[0], MPI_STATE_T, 0, MPI_COMM_WORLD);
set_cell_data(&H_global[0]);
set_cell_coordinates(&x_global[0], &dx_global[0], &y_global[0], &dy_global[0]);
if (view_mode == 0) {
mesh->proc.resize(ncells);
for (size_t ii = 0; ii<ncells; ii++){
mesh->proc[ii] = mesh->mype;
}
MPI_Gatherv(&mesh->proc[0], nsizes[mype], MPI_INT, &proc_global[0], &nsizes[0], &ndispl[0], MPI_C_REAL, 0, MPI_COMM_WORLD);
}
set_cell_proc(&proc_global[0]);
#endif
#ifdef HAVE_MPE
set_mysize(ncells);
set_cell_data(&state->H[0]);
set_cell_coordinates(&mesh->x[0], &mesh->dx[0], &mesh->y[0], &mesh->dy[0]);
set_cell_proc(&mesh->proc[0]);
#endif
set_window((float)mesh->xmin, (float)mesh->xmax, (float)mesh->ymin, (float)mesh->ymax);
set_viewmode(view_mode);
set_outline((int)outline);
init_display(&argc, argv, "Shallow Water");
set_circle_radius(circle_radius);
draw_scene();
if (verbose) sleep(5);
sleep(2);
// Set flag to show mesh results rather than domain decomposition.
view_mode = 1;
// Clear superposition of circle on grid output.
circle_radius = -1.0;
MPI_Barrier(MPI_COMM_WORLD);
cpu_timer_start(&tstart);
set_idle_function(&do_calc);
start_main_loop();
#else
MPI_Barrier(MPI_COMM_WORLD);
cpu_timer_start(&tstart);
for (int it = 0; it < 10000000; it++) {
do_calc();
}
#endif
return 0;
}
int main(int argc, char **argv) {
// Needed for code to compile correctly on the Mac
int mype=0;
int numpe=-1;
// Process command-line arguments, if any.
parseInput(argc, argv);
struct timeval tstart_setup;
cpu_timer_start(&tstart_setup);
numpe = 16;
double circ_radius = 6.0;
// Scale the circle appropriately for the mesh size.
circ_radius = circ_radius * (double) nx / 128.0;
int boundary = 1;
int parallel_in = 0;
mesh = new Mesh(nx, ny, levmx, ndim, boundary, parallel_in, do_gpu_calc);
if (DEBUG) {
//if (mype == 0) mesh->print();
char filename[10];
sprintf(filename,"out%1d",mype);
mesh->fp=fopen(filename,"w");
//mesh->print_local();
}
mesh->init(nx, ny, circ_radius, initial_order, do_gpu_calc);
size_t &ncells = mesh->ncells;
state = new State(mesh);
state->init(do_gpu_calc);
mesh->proc.resize(ncells);
mesh->calc_distribution(numpe);
state->fill_circle(circ_radius, 100.0, 5.0);
mesh->nlft = NULL;
mesh->nrht = NULL;
mesh->nbot = NULL;
mesh->ntop = NULL;
// Kahan-type enhanced precision sum implementation.
double H_sum = state->mass_sum(enhanced_precision_sum);
printf ("Mass of initialized cells equal to %14.12lg\n", H_sum);
H_sum_initial = H_sum;
double cpu_time_main_setup = cpu_timer_stop(tstart_setup);
state->parallel_timer_output(numpe,mype,"CPU: setup time time was",cpu_time_main_setup);
long long mem_used = memstats_memused();
if (mem_used > 0) {
printf("Memory used in startup %lld kB\n",mem_used);
printf("Memory peak in startup %lld kB\n",memstats_mempeak());
printf("Memory free at startup %lld kB\n",memstats_memfree());
printf("Memory available at startup %lld kB\n",memstats_memtotal());
}
printf("Iteration 0 timestep n/a Sim Time 0.0 cells %ld Mass Sum %14.12lg\n", ncells, H_sum);
mesh->cpu_calc_neigh_counter=0;
mesh->cpu_time_calc_neighbors=0.0;
mesh->cpu_rezone_counter=0;
mesh->cpu_time_rezone_all=0.0;
mesh->cpu_refine_smooth_counter=0;
// Set up grid.
#ifdef GRAPHICS_OUTPUT
mesh->write_grid(n);
#endif
#ifdef HAVE_GRAPHICS
set_mysize(ncells);
set_viewmode(view_mode);
set_window(mesh->xmin, mesh->xmax, mesh->ymin, mesh->ymax);
set_outline((int)outline);
init_display(&argc, argv, "Shallow Water", mype);
set_cell_coordinates(&mesh->x[0], &mesh->dx[0], &mesh->y[0], &mesh->dy[0]);
set_cell_data(&state->H[0]);
set_cell_proc(&mesh->proc[0]);
set_circle_radius(circle_radius);
draw_scene();
//if (verbose) sleep(5);
sleep(2);
// Set flag to show mesh results rather than domain decomposition.
view_mode = 1;
// Clear superposition of circle on grid output.
circle_radius = -1.0;
cpu_timer_start(&tstart);
set_idle_function(&do_calc);
start_main_loop();
#else
cpu_timer_start(&tstart);
for (int it = 0; it < 10000000; it++) {
do_calc();
}
#endif
return 0;
}