size_t integrate_adaptive(
Stepper stepper , System system , State &start_state ,
Time start_time , Time end_time , Time dt ,
Observer observer , dense_output_stepper_tag )
{
typename odeint::unwrap_reference< Observer >::type &obs = observer;
typename odeint::unwrap_reference< Stepper >::type &st = stepper;
size_t count = 0;
st.initialize( start_state , start_time , dt );
while( less_with_sign( st.current_time() , end_time , st.current_time_step() ) )
{
while( less_eq_with_sign( static_cast<Time>(st.current_time() + st.current_time_step()) ,
end_time ,
st.current_time_step() ) )
{ //make sure we don't go beyond the end_time
obs( st.current_state() , st.current_time() );
st.do_step( system );
++count;
}
// calculate time step to arrive exactly at end time
st.initialize( st.current_state() , st.current_time() , end_time - st.current_time() );
}
obs( st.current_state() , st.current_time() );
// overwrite start_state with the final point
boost::numeric::odeint::copy( st.current_state() , start_state );
return count;
}
size_t integrate_const(
Stepper stepper , System system , State &start_state ,
Time start_time , Time end_time , Time dt ,
Observer observer , stepper_tag
)
{
typename odeint::unwrap_reference< Observer >::type &obs = observer;
typename odeint::unwrap_reference< Stepper >::type &st = stepper;
Time time = start_time;
int step = 0;
// cast time+dt explicitely in case of expression templates (e.g. multiprecision)
while( less_eq_with_sign( static_cast<Time>(time+dt) , end_time , dt ) )
{
obs( start_state , time );
st.do_step( system , start_state , time , dt );
// direct computation of the time avoids error propagation happening when using time += dt
// we need clumsy type analysis to get boost units working here
++step;
time = start_time + static_cast< typename unit_value_type<Time>::type >(step) * dt;
}
obs( start_state , time );
return step;
}
void cons(){
int i,j,k;
pos t,tn,t0,t1,t2,t3;
for(i=0;i<MN;i++)for(j=0;j<MN;j++){
t.y=i;t.x=j;
//printf("%c ",frt[i][j]);
switch(frt[i][j]){
case 'F':
case 'C':{
if(frt[i][j]=='F'){frm.y=i;frm.x=j;}
if(frt[i][j]=='C'){cow.y=i;cow.x=j;}
}
case '.':{
for(k=0;k<4;k++){
t0=nbr(t,k);
t1=nbr(t,(k+1)%4);
t2=nbr(t,(k+2)%4);
t3=nbr(t,(k+3)%4);
if(!obs(t2))
edg[nod[i][j][k]][nod[t2.y][t2.x][k]]=1;
if(obs(t2)&&!obs(t3))
edg[nod[i][j][k]][nod[t3.y][t3.x][(k+1)%4]]=2;
if(obs(t2)&&obs(t3)&&!obs(t0))
edg[nod[i][j][k]][nod[t0.y][t0.x][(k+2)%4]]=3;
if(obs(t2)&&obs(t3)&&obs(t0)&&!obs(t1))
edg[nod[i][j][k]][nod[t1.y][t1.x][(k+3)%4]]=4;
}
break;
}
case '*':break;
};
}
}
size_t integrate_adaptive(
Stepper stepper , System system , State &start_state ,
Time &start_time , Time end_time , Time &dt ,
Observer observer , controlled_stepper_tag
)
{
typename odeint::unwrap_reference< Observer >::type &obs = observer;
typename odeint::unwrap_reference< Stepper >::type &st = stepper;
const size_t max_attempts = 1000;
const char *error_string = "Integrate adaptive : Maximal number of iterations reached. A step size could not be found.";
size_t count = 0;
while( less_with_sign( start_time , end_time , dt ) )
{
obs( start_state , start_time );
if( less_with_sign( end_time , start_time + dt , dt ) )
{
dt = end_time - start_time;
}
size_t trials = 0;
controlled_step_result res = success;
do
{
res = st.try_step( system , start_state , start_time , dt );
++trials;
}
while( ( res == fail ) && ( trials < max_attempts ) );
if( trials == max_attempts ) throw std::overflow_error( error_string );
++count;
}
obs( start_state , start_time );
return count;
}
size_t integrate_const(
Stepper stepper , System system , State &start_state ,
Time start_time , Time end_time , Time dt ,
Observer observer , controlled_stepper_tag
)
{
typename odeint::unwrap_reference< Observer >::type &obs = observer;
Time time = start_time;
const Time time_step = dt;
int real_steps = 0;
int step = 0;
while( less_eq_with_sign( static_cast<Time>(time+time_step) , end_time , dt ) )
{
obs( start_state , time );
real_steps += detail::integrate_adaptive( stepper , system , start_state , time , time+time_step , dt ,
null_observer() , controlled_stepper_tag() );
// direct computation of the time avoids error propagation happening when using time += dt
// we need clumsy type analysis to get boost units working here
step++;
time = start_time + static_cast< typename unit_value_type<Time>::type >(step) * time_step;
}
obs( start_state , time );
return real_steps;
}
void CHemlockLooperModel::AddDailyResult(const StringVector& header, const StringVector& data)
{
enum TInputAllStage{ E_NAME, E_ID, E_YEAR, E_MONTH, E_DAY, E_JDAY, E_CUMUL_L1, E_CUMUL_L2, E_CUMUL_L3, E_CUMUL_L4, E_CUMUL_PUPA, E_CUMUL_ADULT, NB_INPUT, NB_COLUMN = NB_INPUT + 7 };
enum TInputPupasion{ P_NAME, P_ID, P_YEAR, P_MONTH, P_DAY, P_NB_DAYS, P_N, NB_INPUT_PUPAISON };
CTRef TRef(ToInt(data[E_YEAR]), ToSizeT(data[E_MONTH]) - 1, ToSizeT(data[E_DAY]) - 1);
if (header.size() == NB_COLUMN)
{
std::vector<double> obs(NB_INPUT - E_CUMUL_L1);
for (size_t i = 0; i < obs.size(); i++)
obs[i] = ToDouble(data[E_CUMUL_L1 + i]);
m_SAResult.push_back(CSAResult(TRef, obs));
}
else if (header.size() == NB_INPUT_PUPAISON)
{
std::vector<double> obs(2);
obs[PUP_NB_DAYS] = ToDouble(data[P_NB_DAYS]);
obs[PUP_N] = ToDouble(data[P_N]);
m_SAResult.push_back(CSAResult(TRef, obs));
}
}
size_t integrate_adaptive(
Stepper stepper , System system , State &start_state ,
Time &start_time , Time end_time , Time &dt ,
Observer observer , controlled_stepper_tag
)
{
typename odeint::unwrap_reference< Observer >::type &obs = observer;
typename odeint::unwrap_reference< Stepper >::type &st = stepper;
failed_step_checker fail_checker; // to throw a runtime_error if step size adjustment fails
size_t count = 0;
while( less_with_sign( start_time , end_time , dt ) )
{
obs( start_state , start_time );
if( less_with_sign( end_time , static_cast<Time>(start_time + dt) , dt ) )
{
dt = end_time - start_time;
}
controlled_step_result res;
do
{
res = st.try_step( system , start_state , start_time , dt );
fail_checker(); // check number of failed steps
}
while( res == fail );
fail_checker.reset(); // if we reach here, the step was successful -> reset fail checker
++count;
}
obs( start_state , start_time );
return count;
}
Type objective_function<Type>::operator() ()
{
DATA_MATRIX(obs);
DATA_MATRIX(coord);
DATA_VECTOR(covObs);
DATA_INTEGER(p);
DATA_VECTOR(h);
PARAMETER(logObsSd);
PARAMETER(logObsTSd);
PARAMETER(logStatSd);
PARAMETER_MATRIX(x);
Type nll = 0.0;
covafill<Type> cf(coord,covObs,h,p);
// Contribution from states
for(int i = 1; i < x.cols(); ++i) {
nll -= dnorm(x(0,i), x(0,i-1), exp(logStatSd),true);
nll -= dnorm(x(1,i), x(1,i-1), exp(logStatSd),true);
}
// contribution from observations
for(int i = 0; i < obs.cols(); ++i) {
nll -= dnorm(obs(0,i), x(0,i), exp(logObsSd),true);
nll -= dnorm(obs(1,i), x(1,i), exp(logObsSd),true);
vector<Type> tmp = x.col(i);
Type val = evalFill((CppAD::vector<Type>)tmp, cf)[0];
nll -= dnorm(obs(2,i), val, exp(logObsTSd),true);
}
return nll;
}
size_t integrate_const(
Stepper stepper , System system , State &start_state ,
Time start_time , Time end_time , Time dt ,
Observer observer , dense_output_stepper_tag
)
{
typename odeint::unwrap_reference< Observer >::type &obs = observer;
typename odeint::unwrap_reference< Stepper >::type &st = stepper;
Time time = start_time;
st.initialize( start_state , time , dt );
obs( start_state , time );
time += dt;
int obs_step( 1 );
int real_step( 0 );
while( less_with_sign( static_cast<Time>(time+dt) , end_time , dt ) )
{
while( less_eq_with_sign( time , st.current_time() , dt ) )
{
st.calc_state( time , start_state );
obs( start_state , time );
++obs_step;
// direct computation of the time avoids error propagation happening when using time += dt
// we need clumsy type analysis to get boost units working here
time = start_time + static_cast< typename unit_value_type<Time>::type >(obs_step) * dt;
}
// we have not reached the end, do another real step
if( less_with_sign( static_cast<Time>(st.current_time()+st.current_time_step()) ,
end_time ,
st.current_time_step() ) )
{
while( less_eq_with_sign( st.current_time() , time , dt ) )
{
st.do_step( system );
++real_step;
}
}
else if( less_with_sign( st.current_time() , end_time , st.current_time_step() ) )
{ // do the last step ending exactly on the end point
st.initialize( st.current_state() , st.current_time() , end_time - st.current_time() );
st.do_step( system );
++real_step;
}
}
// last observation, if we are still in observation interval
if( less_eq_with_sign( time , end_time , dt ) )
{
st.calc_state( time , start_state );
obs( start_state , time );
}
return real_step;
}
Time integrate_n_steps(
Stepper stepper , System system , State &start_state ,
Time start_time , Time dt , size_t num_of_steps ,
Observer observer , dense_output_stepper_tag )
{
typename odeint::unwrap_reference< Observer >::type &obs = observer;
typename odeint::unwrap_reference< Stepper >::type &st = stepper;
Time time = start_time;
const Time end_time = start_time + static_cast< typename unit_value_type<Time>::type >(num_of_steps) * dt;
st.initialize( start_state , time , dt );
size_t step = 0;
while( step < num_of_steps )
{
while( less_with_sign( time , st.current_time() , st.current_time_step() ) )
{
st.calc_state( time , start_state );
obs( start_state , time );
++step;
// direct computation of the time avoids error propagation happening when using time += dt
// we need clumsy type analysis to get boost units working here
time = start_time + static_cast< typename unit_value_type<Time>::type >(step) * dt;
}
// we have not reached the end, do another real step
if( less_with_sign( static_cast<Time>(st.current_time()+st.current_time_step()) ,
end_time ,
st.current_time_step() ) )
{
st.do_step( system );
}
else if( less_with_sign( st.current_time() , end_time , st.current_time_step() ) )
{ // do the last step ending exactly on the end point
st.initialize( st.current_state() , st.current_time() , static_cast<Time>(end_time - st.current_time()) );
st.do_step( system );
}
}
while( st.current_time() < end_time )
{
if( less_with_sign( end_time ,
static_cast<Time>(st.current_time()+st.current_time_step()) ,
st.current_time_step() ) )
st.initialize( st.current_state() , st.current_time() , static_cast<Time>(end_time - st.current_time()) );
st.do_step( system );
}
// observation at end point, only if we ended exactly on the end-point (or above due to finite precision)
obs( st.current_state() , end_time );
return time;
}
size_t integrate_times(
Stepper stepper , System system , State &start_state ,
TimeIterator start_time , TimeIterator end_time , Time dt ,
Observer observer , dense_output_stepper_tag
)
{
typename odeint::unwrap_reference< Observer >::type &obs = observer;
typename odeint::unwrap_reference< Stepper >::type &st = stepper;
typedef typename unit_value_type<Time>::type time_type;
if( start_time == end_time )
return 0;
TimeIterator last_time_iterator = end_time;
--last_time_iterator;
Time last_time_point = static_cast<time_type>(*last_time_iterator);
st.initialize( start_state , *start_time , dt );
obs( start_state , *start_time++ );
size_t count = 0;
while( start_time != end_time )
{
while( ( start_time != end_time ) && less_eq_with_sign( static_cast<time_type>(*start_time) , st.current_time() , st.current_time_step() ) )
{
st.calc_state( *start_time , start_state );
obs( start_state , *start_time );
start_time++;
}
// we have not reached the end, do another real step
if( less_eq_with_sign( st.current_time() + st.current_time_step() ,
last_time_point ,
st.current_time_step() ) )
{
st.do_step( system );
++count;
}
else if( start_time != end_time )
{ // do the last step ending exactly on the end point
st.initialize( st.current_state() , st.current_time() , last_time_point - st.current_time() );
st.do_step( system );
++count;
}
}
return count;
}
void singlePlanner::setObstacles(const std::vector<Vector> &obstacles)
{
//obsSet.resize(obstacles.size());
region *obstacle;
for(int j=0; j<obstacles.size(); j++)
{
obstacle = new region;
obstacle->setNumDimensions(nDim);
Vector obs(2*nDim,0.0);
for (int i=0; i<nDim; i++)
{
obstacle->center[i] = obstacles[j][i];
obstacle->size[i] = obstacles[j][i+3];
obs[i]=obstacles[j][i];
obs[i+3]=obstacles[j][i+3];
}
system.obstacles.push_front(obstacle);
obsSet.push_back(obs);
}
// cout<<"data in obsSet "<<endl;
// for (int j=0; j<obsSet.size(); j++)
// {
// printf("Obstacle [%i] = [%g,%g,%g,%g,%g,%g]\n",
// j, obsSet[j][0], obsSet[j][1], obsSet[j][2],
// obsSet[j][3], obsSet[j][4], obsSet[j][5]);
// }
// cout<<endl;
// rrts.setSystem(system);
}
void Casan::check_observed_resources (Msg &out)
{
Resource *res ;
reslist *rl ;
for (rl = reslist_ ; rl != NULL ; rl = rl->next)
{
res = rl->res ;
if (res->check_trigger ())
{
DBG1 (F (B_BLUE "Observed resource '")) ;
DBG1 (rl->res->name ()) ;
DBG1 (F ("' triggered" C_RESET)) ;
DBGLN0 () ;
out.reset () ;
out.set_type (COAP_TYPE_ACK) ;
out.set_token (res->get_token ()) ;
out.set_id (curid_++) ;
out.set_code (COAP_CODE_OK) ;
option obs (option::MO_Observe, res->next_serial ()) ;
out.push_option (obs) ;
request_resource (NULL, &out, res) ;
out.send (*master_) ;
}
}
}
void testObservations() {
printf("== TEST OBSERVATIONS ==\n");
printf("- Testing construction\n");
RLObservation obs(3);
RLObservation obs2(3);
for (int i=0; i<3; i++) {
obs[i] = observation[i];
obs2[i] = observation2[i];
}
printf("-> PASSED\n");
printf("- Testing [] operator\n");
for (int i=0; i<3; i++) {
printf("%f %f\n", obs.observations[i], observation[i]);
assert( obs[i] == observation[i] );
}
printf("-> PASSED\n");
printf("- Testing copyFrom\n");
obs.copyFrom(obs2);
for (int i=0; i<3; i++)
assert( obs[i] == observation2[i] );
printf("-> PASSED\n");
}
bool operator()(KMInput & input) {
bool improvement(false);
input.computeDistances();
// IntVector tLabel(input.getK(), 0);
// _v.allocate(input.nbObs(), input.getK());
// for (size_t obs(0); obs < input.nbObs(); ++obs) {
// for (size_t j(0); j < input.getK(); ++j) {
// _v.get(obs, j) = input.getDelta(obs, j);
// }
// }
do {
++input.ite();
improvement = false;
for (size_t obs(0); obs < input.nbObs(); ++obs) {
std::pair<size_t, Double> const delta(input.getBest(obs));
if (delta.second < 0) {
input.cost() += delta.second;
input.shift(obs, delta.first);
improvement = true;
}
}
if (improvement && isTraceOn)
input.out("KMEANS");
} while (improvement);
return improvement;
}
TEST(Account, shouldTriggerMemberObserverEvents) {
// given
Account acc;
MockModelObserver obs(acc);
{
InSequence dummy;
EXPECT_CALL(obs, willChange("name"));
EXPECT_CALL(obs, didChange("name"));
EXPECT_CALL(obs, willChange("descr"));
EXPECT_CALL(obs, didChange("descr"));
EXPECT_CALL(obs, willChange("type"));
EXPECT_CALL(obs, didChange("type"));
}
// when
acc.setName("A name");
acc.setDescr("A descr");
acc.setType(Account::AccountType::Asset);
// then
// mock expectations implicitly verified
}
int main() {
// Run IRIS with the required_containment_points including a point which is outside the feasible set, which should result in an empty polyhedron
iris::IRISProblem problem(2);
problem.setSeedPoint(Eigen::Vector2d(0.1, 0.1));
Eigen::MatrixXd obs(2,2);
// Inflate a region inside a 1x1 box
obs << 0, 1,
0, 0;
problem.addObstacle(obs);
obs << 1, 1,
0, 1;
problem.addObstacle(obs);
obs << 1, 0,
1, 1;
problem.addObstacle(obs);
obs << 0, 0,
1, 0;
problem.addObstacle(obs);
iris::IRISOptions options;
options.require_containment = true;
options.required_containment_points = {Eigen::Vector2d(1.5, 1.5)};
auto region = inflate_region(problem, options);
if (region->polyhedron->getNumberOfConstraints() > 0) {
throw std::runtime_error("polyhedron should be empty");
}
return 0;
}
bool GridDetector::initCameraGeometryFromObservations(boost::shared_ptr<std::vector<cv::Mat> > images_ptr) {
std::vector<cv::Mat>& images = *images_ptr;
SM_DEFINE_EXCEPTION(Exception, std::runtime_error);
SM_ASSERT_TRUE(Exception, images.size() != 0, "Need min. one image");
std::vector<GridCalibrationTargetObservation> observations;
for(unsigned int i=0; i<images.size(); i++)
{
GridCalibrationTargetObservation obs(_target);
//detect calibration target
bool success = findTargetNoTransformation(images[i], obs);
//delete image copy (save memory)
obs.clearImage();
//append
if(success)
observations.push_back(obs);
}
//initialize the intrinsics
if(observations.size() > 0)
return _geometry->initializeIntrinsics(observations);
return false;
}
int main(int argc, char** argv) {
iris::IRISProblem problem(2);
problem.setSeedPoint(Eigen::Vector2d(0.1, 0.1));
Eigen::MatrixXd obs(2,2);
// Inflate a region inside a 1x1 box
obs << 0, 1,
0, 0;
problem.addObstacle(obs);
obs << 1, 1,
0, 1;
problem.addObstacle(obs);
obs << 1, 0,
1, 1;
problem.addObstacle(obs);
obs << 0, 0,
1, 0;
problem.addObstacle(obs);
iris::IRISOptions options;
iris::IRISRegion region = inflate_region(problem, options);
std::cout << "C: " << region.ellipsoid.getC() << std::endl;
std::cout << "d: " << region.ellipsoid.getD() << std::endl;
return 0;
}
int haplotypeCluster::closestN(int N, int clusteridx,
vector<pair<int, float> > &output) {
output.resize(N);
int count = 0;
float d, maxdist = -1.0;
int maxind = -1;
for (int i = 0; i < nhap; i++) {
if (cluster_mask[i]) {
d = euc(i, clusteridx, mu, dlook);
pair<int, float> obs(i, d);
if (count < N) {
output[count] = obs;
if (obs.second > maxdist) {
maxdist = obs.second;
maxind = count;
}
} else if (obs.second > maxdist) {
output[maxind] = obs;
maxind = 0;
for (int j = 1; j < N; j++)
if (output[j].second > output[maxind].second)
maxind = j;
maxdist = output[maxind].second;
}
count++;
}
}
return 0;
}
size_t integrate_times(
Stepper stepper , System system , State &start_state ,
TimeIterator start_time , TimeIterator end_time , Time dt ,
Observer observer , stepper_tag
)
{
typename odeint::unwrap_reference< Observer >::type &obs = observer;
typename odeint::unwrap_reference< Stepper >::type &st = stepper;
typedef typename unit_value_type<Time>::type time_type;
size_t steps = 0;
Time current_dt = dt;
while( true )
{
Time current_time = *start_time++;
obs( start_state , current_time );
if( start_time == end_time )
break;
while( less_with_sign( current_time , static_cast<time_type>(*start_time) , current_dt ) )
{
current_dt = min_abs( dt , *start_time - current_time );
st.do_step( system , start_state , current_time , current_dt );
current_time += current_dt;
steps++;
}
}
return steps;
}
void CWhitePineWeevilModel::AddDailyResult(const StringVector& header, const StringVector& data)
{
enum TInputAllStage{ E_ID, E_YEAR, E_MONTH, E_DAY, E_DD, E_EGG, E_EGG_CUMUL, E_L1, E_CUMUL_L1, E_L2, E_CUMUL_L2, E_L3, E_CUMUL_L3, E_L4, E_CUMUL_L4, E_PUPA, E_CUMUL_PUPA, E_ADULT, E_CUMUL_ADULT, NB_INPUTS_STAGE };
enum TInputDD{ P_YEAR, P_MONTH, P_DAY, P_DD, NB_INPUTS_DD };
if (header.size() == NB_INPUTS_STAGE)
{
CTRef TRef(ToInt(data[E_YEAR]), ToSizeT(data[E_MONTH]) - 1, ToSizeT(data[E_DAY]) - 1);
std::vector<double> obs(NB_STAGES,-999);
for (size_t i = 0; i < 7 && E_EGG_CUMUL + 2 * i<data.size(); i++)
obs[i] = !data[E_EGG_CUMUL + 2 * i].empty()?ToDouble(data[E_EGG_CUMUL + 2 * i]):-999;
m_SAResult.push_back(CSAResult(TRef, obs));
}
/*else if (header.size() == NB_INPUTS_DD)
{
//CTRef TRef(ToInt(data[P_YEAR]), ToSizeT(data[P_MONTH]) - 1, ToSizeT(data[P_DAY]) - 1);
std::vector<double> obs(2);
obs[PUP_NB_DAYS] = ToDouble(data[P_NB_DAYS]);
obs[PUP_N] = ToDouble(data[P_N]);
m_SAResult.push_back(CSAResult(TRef, obs));
}*/
}
double crudeMC(crudeMCArgs& args)
{
std::size_t n = args.n;
if(n <= 0)
{
throw std::runtime_error("Input n must be positive");
}
const context& contextObj = args.contextObj;
boost::detail::depth_first_visit_restricted_impl_helper<context::internalGraph>::stackType stack;
std::vector<int> components;
std::vector<int> interestComponents;
const std::vector<int> interestVertices = contextObj.getInterestVertices();
std::vector<boost::default_color_type> colorMap;
int countDisconnected = 0;
for(std::size_t i = 0; i < n; i++)
{
NetworkReliabilityObs obs(contextObj, args.randomSource);
if(!isSingleComponent(contextObj.getGraph(), obs.getState(), components, stack, colorMap, contextObj.getInterestVertices()))
{
countDisconnected++;
}
}
return (float)countDisconnected / (float)n;
}
void
covafillJAGS::evaluate (double *value, vector<double const *> const &args,
vector<vector<unsigned int> > const &dims) const
{
// Create X
unsigned int nrowX = dims[0][0];
unsigned int ncolX = dims[0].size() == 2 ? dims[0][1] : 1;
cMatrix X(nrowX,ncolX);
unsigned int indx;
indx = 0;
// JAGS uses column-major
for (unsigned int j = 0; j < ncolX; ++j) {
for (unsigned int i = 0; i < nrowX; ++i) {
X(i,j) = args[0][indx++];
}
}
// Create coordinates
unsigned int nrowC = dims[1][0];
unsigned int ncolC = dims[1].size() == 2 ? dims[1][1] : 1;
cMatrix coord(nrowC,ncolC);
indx = 0;
// JAGS uses column-major
for (unsigned int j = 0; j < ncolC; ++j) {
for (unsigned int i = 0; i < nrowC; ++i) {
coord(i,j) = args[1][indx++];
}
}
// Create obs
unsigned int lengthO = dims[2][0];
cVector obs(lengthO);
for(unsigned int i = 0; i < lengthO; ++i){
obs[i] = args[2][i];
}
// Create h
unsigned int lengthH = dims[3][0];
cVector h(ncolC);
for(unsigned int i = 0; i < ncolC; ++i){
if(lengthH == 1){
h[i] = args[3][0];
}else{
h[i] = args[3][i];
}
}
// Create p
double p = args[4][0];
// Create covarfill
covafill<double> cf(coord,obs,h,p);
// Calculate
for(unsigned int i = 0; i < nrowX; ++i)
value[i] = cf((cVector)X.row(i))(0);
}
TEST(DetectAll, detection) {
// DetectAll should detect all candidates
DetectAll obs("Wait", "You forgot your lunchbox");
Candidate c;
obs.process(&c);
EXPECT_FALSE(c.isActive());
EXPECT_TRUE(c.hasProperty("Wait"));
}
TEST(SmallObserverSphere, limitStep) {
SmallObserverSphere obs(Vector3d(0, 0, 0), 1);
Candidate c;
c.setNextStep(10);
c.current.setPosition(Vector3d(0, 0, 2));
obs.process(&c);
EXPECT_DOUBLE_EQ(c.getNextStep(), 1);
}
int ObservationInfo::processArgs (const char *arg)
{
int obs_id;
obs_id = atoi (arg);
rts2db::Observation obs (obs_id);
obsset->push_back (obs);
return 0;
}
int main(int argc, char** argv) {
pMyObservable d(new DataRepository);
myObserver obs(d,"count_to_10_data");
d->run();
return 0;
}
List viterbi(const arma::mat& transition, NumericVector emissionArray,
const arma::vec& init, IntegerVector obsArray) {
IntegerVector eDims = emissionArray.attr("dim"); //m,p,r
IntegerVector oDims = obsArray.attr("dim"); //k,n,r
arma::cube emission(emissionArray.begin(), eDims[0], eDims[1], eDims[2], false, true);
arma::icube obs(obsArray.begin(), oDims[0], oDims[1], oDims[2], false, true);
arma::umat q(obs.n_slices, obs.n_cols);
arma::vec logp(obs.n_slices);
arma::mat delta(emission.n_rows, obs.n_cols);
arma::umat phi(emission.n_rows, obs.n_cols);
for (unsigned int k = 0; k < obs.n_slices; k++) {
delta.col(0) = init;
for (unsigned int r = 0; r < emission.n_slices; r++) {
delta.col(0) += emission.slice(r).col(obs(r, 0, k));
}
phi.col(0).zeros();
for (unsigned int t = 1; t < obs.n_cols; t++) {
for (unsigned int j = 0; j < emission.n_rows; j++) {
(delta.col(t - 1) + transition.col(j)).max(phi(j, t));
delta(j, t) = delta(phi(j, t), t - 1) + transition(phi(j, t), j);
for (unsigned int r = 0; r < emission.n_slices; r++) {
delta(j, t) += emission(j, obs(r, t, k), r);
}
}
}
delta.col(obs.n_cols - 1).max(q(k, obs.n_cols - 1));
for (int t = (obs.n_cols - 2); t >= 0; t--) {
q(k, t) = phi(q(k, t + 1), t + 1);
}
logp(k) = delta.col(obs.n_cols - 1).max();
}
return List::create(Named("q") = wrap(q), Named("logp") = wrap(logp));
}
nsAppShellService::nsAppShellService() :
mXPCOMShuttingDown(PR_FALSE),
mModalWindowCount(0),
mApplicationProvidedHiddenWindow(PR_FALSE)
{
nsCOMPtr<nsIObserverService> obs
(do_GetService("@mozilla.org/observer-service;1"));
if (obs)
obs->AddObserver(this, "xpcom-shutdown", PR_FALSE);
}