//**********************************************************************************************************************
vector<string> PCOACommand::setParameters(){
try {
CommandParameter pphylip("phylip", "InputTypes", "", "", "none", "none", "none",false,true); parameters.push_back(pphylip);
CommandParameter pmetric("metric", "Boolean", "", "T", "", "", "",false,false); parameters.push_back(pmetric);
CommandParameter pinputdir("inputdir", "String", "", "", "", "", "",false,false); parameters.push_back(pinputdir);
CommandParameter poutputdir("outputdir", "String", "", "", "", "", "",false,false); parameters.push_back(poutputdir);
vector<string> myArray;
for (int i = 0; i < parameters.size(); i++) { myArray.push_back(parameters[i].name); }
return myArray;
}
catch(exception& e) {
m->errorOut(e, "PCOACommand", "setParameters");
exit(1);
}
}
//**********************************************************************************************************************
vector<string> CooccurrenceCommand::setParameters() {
try {
CommandParameter pshared("shared", "InputTypes", "", "", "none", "none", "none","summary",false,true,true); parameters.push_back(pshared);
CommandParameter pmetric("metric", "Multiple", "cscore-checker-combo-vratio", "cscore", "", "", "","",false,false); parameters.push_back(pmetric);
CommandParameter pmatrix("matrixmodel", "Multiple", "sim1-sim2-sim3-sim4-sim5-sim6-sim7-sim8-sim9", "sim2", "", "", "","",false,false); parameters.push_back(pmatrix);
CommandParameter pruns("iters", "Number", "", "1000", "", "", "","",false,false); parameters.push_back(pruns);
CommandParameter pseed("seed", "Number", "", "0", "", "", "","",false,false); parameters.push_back(pseed);
CommandParameter pinputdir("inputdir", "String", "", "", "", "", "","",false,false); parameters.push_back(pinputdir);
CommandParameter poutputdir("outputdir", "String", "", "", "", "", "","",false,false); parameters.push_back(poutputdir);
CommandParameter plabel("label", "String", "", "", "", "", "","",false,false); parameters.push_back(plabel);
CommandParameter pgroups("groups", "String", "", "", "", "", "","",false,false); parameters.push_back(pgroups);
vector<string> myArray;
for (int i = 0; i < parameters.size(); i++) { myArray.push_back(parameters[i].name); }
return myArray;
}
catch(exception& e) {
m->errorOut(e, "CooccurrenceCommand", "setParameters");
exit(1);
}
}
bool SkPMetric::diff(SkBitmap* baseline,
SkBitmap* test,
const SkImageDiffer::BitmapsToCreate& bitmapsToCreate,
SkImageDiffer::Result* result) {
// Ensure the images are comparable
if (baseline->width() != test->width() ||
baseline->height() != test->height() || baseline->width() <= 0 ||
baseline->height() <= 0) {
return false;
}
ImageLAB baselineLAB(baseline->width(), baseline->height());
ImageLAB testLAB(baseline->width(), baseline->height());
if (!bitmap_to_cielab(baseline, &baselineLAB) ||
!bitmap_to_cielab(test, &testLAB)) {
return true;
}
result->poiCount = 0;
result->result = pmetric(&baselineLAB, &testLAB, &result->poiCount);
return true;
}
