void kjm::appBar::setPos(int uEdge, SIZE size) {
m_abd.uEdge = uEdge;
m_abd.rc = queryPos(uEdge, size);
SHAppBarMessage(ABM_SETPOS, &m_abd);
MoveWindow(m_abd.hWnd, m_abd.rc.left, m_abd.rc.top, m_abd.rc.right - m_abd.rc.left, m_abd.rc.bottom - m_abd.rc.top, TRUE);
}
void MappingMergeScheme::generateMerge(size_t queryContig, size_t queryBase,
size_t referenceContig, size_t referenceBase, bool orientation) const {
// Right now credit merging schemes are attempting to merge off-contig
// positions but are otherwise behaving as expected. Throw warning and
// don't merge rather than runtime error until this is worked out.
/*if(referenceBase > index.getContigLength(referenceContig) ||
referenceBase == 0) {
// Complain that we're trying to talk about an off-the-contig position.
throw std::runtime_error("Reference base " +
std::to_string(referenceBase) +
" on contig " + std::to_string(referenceContig) +
" is beyond 1-based bounds of length " +
std::to_string(index.getContigLength(referenceContig)));
}
if(queryBase > index.getContigLength(queryContig) ||
queryBase == 0) {
// Complain that we're trying to talk about an off-the-contig position.
throw std::runtime_error("Query base " + std::to_string(queryBase) +
" on contig " + std::to_string(queryContig) +
" is beyond 1-based bounds of length " +
std::to_string(index.getContigLength(queryContig)));
}*/
// Where in the query do we want to come from? Always on the forward strand.
// Correct offset to 0-based.
TextPosition queryPos(queryContig * 2, queryBase - 1);
// Where in the reference do we want to go to? May b e on the forward or
// reverse strand. Correct text and offset for orientation, and correct
// offset to 0-based (at the same time).
TextPosition referencePos(referenceContig * 2 + orientation,
orientation ? (index.getContigLength(referenceContig) - referenceBase) :
(referenceBase - 1));
// Make a Merge between these positions.
// Right now credit merging schemes are attempting to merge off-contig
// positions but are otherwise behaving as expected. Throw warning and
// don't merge rather than runtime error until this is worked out.
if(queryBase > index.getContigLength(queryContig) || queryBase == 0 ||
referenceBase > index.getContigLength(referenceContig) || referenceBase == 0) {
Log::info() << "****WARNING: tried to merge (to) an off-contig position!****" << std::endl;
} else {
Merge merge(queryPos, referencePos);
// Send that merge to the queue.
// Lock the queue.
auto lock = queue->lock();
// Spend our lock to add something to it.
queue->enqueue(merge, lock);
}
}