int GFastaIndex::storeIndex(FILE* fai) {
int rcount=0;
GList<GFastaRec> reclist(true,false,true); //sorted, don't free members, unique
records.startIterate();
GFastaRec* rec=NULL;
while ((rec=records.NextData())!=NULL) {
reclist.Add(rec);
}
//reclist has records sorted by file offset
for (int i=0;i<reclist.Count();i++) {
#ifdef __WIN32__
int written=fprintf(fai, "%s\t%d\t%ld\t%d\t%d\n",
reclist[i]->seqname,reclist[i]->seqlen,(long)reclist[i]->fpos,
reclist[i]->line_len, reclist[i]->line_blen);
#else
int written=fprintf(fai, "%s\t%d\t%lld\t%d\t%d\n",
reclist[i]->seqname, reclist[i]->seqlen, (long long)(reclist[i]->fpos),
reclist[i]->line_len, reclist[i]->line_blen);
#endif
if (written>0) rcount++;
else break; //couldn't write anymore
}
fclose(fai);
haveFai=(rcount>0);
return rcount;
}
static void grid_init()
{
snake *temp = NULL;
ps.s = reclist(0, NULL);
for (temp = ps.s; temp->next; temp = temp->next);
/* Circular list: first elem has a ptr to last elem */
ps.s->previous = temp;
fruit_gen();
}
static snake *reclist(int i, snake *previous)
{
snake *s = malloc(sizeof(snake));
if ((s) && (i != STARTING_SIZE)) {
s->x = ROWS/2;
s->y = COLS/2 - i;
s->direction = RIGHT;
ps.grid[s->x][s->y] = 'O';
wattron(ps.field, COLOR_PAIR(2));
mvwprintw(ps.field, s->x + 1, s->y + 1, "%c", ps.grid[s->x][s->y]);
wattroff(ps.field, COLOR_PAIR);
s->previous = previous;
s->next = reclist(i + 1, s);
} else {
s = NULL;
}
return s;
}
void
O2DatDB::
UpdateThread(void)
{
time_t t = time(NULL);
while (UpdateThreadLoop) {
if (time(NULL) - t >= UPDATE_THREAD_INTERVAL_S) {
UpdateQueueLock.Lock();
O2DatRecList reclist(UpdateQueue);
UpdateQueue.clear();
UpdateQueueLock.Unlock();
if (!reclist.empty())
update(reclist);
t = time(NULL);
CLEAR_WORKSET;
//TRACEA("+++++ UPDATE +++++\n");
}
Sleep(3000);
}
}
