search_result Parser::search(string expression, string target)
{
setRegEx(expression);
if (target.empty())
target = source;
search_result res;
smatch match;
while (!target.empty() && regex_search(target, match, exp))
{
vector<string> tmp;
for (string x:match)
tmp.push_back(x);
res.push_back(tmp);
target = match.suffix().str();
//cout << "DEBUG: " << target << endl;
}
return res;
}
bool Parser::match(string expression, string *ptarget, smatch *res)
{
setRegEx(expression);
string target;
if (ptarget == 0)
target = source;
else
target = *ptarget;
//cout << "STR: " << target << endl;
bool ret;
if (res != 0)
ret = regex_search(target, *res, exp);
else
ret = regex_search(target, exp);
if (ret)
return ret;
return false;
}
string Parser::replace(string expression, string replacement, string target)
{
string *tmp;
setRegEx(expression);
if (target.empty())
tmp = &source;
else
tmp = ⌖
try
{
*tmp = regex_replace(*tmp, exp, replacement);
}
catch (...)
{
cout << "ERROR: replace failed." << endl;
return 0;
}
return target;
}
bool DigestionEnzyme::setValueFromFile(const String& key, const String& value)
{
if (key.hasSuffix(":Name"))
{
setName(value);
return true;
}
if (key.hasSuffix(":RegEx"))
{
setRegEx(value);
return true;
}
if (key.hasSuffix(":RegExDescription"))
{
setRegExDescription(value);
return true;
}
if (key.hasSubstring(":Synonyms:"))
{
addSynonym(value);
return true;
}
return false;
}
