void AMGenericStepScanConfigurationView::onScanAxisAdded(AMScanAxis *axis)
{
if (configuration_->scanAxes().size() == 1){
connect(axisStart1_, SIGNAL(editingFinished()), this, SLOT(onStart1Changed()));
connect(axisStep1_, SIGNAL(editingFinished()), this, SLOT(onStep1Changed()));
connect(axisEnd1_, SIGNAL(editingFinished()), this, SLOT(onEnd1Changed()));
connect(dwellTime_, SIGNAL(editingFinished()), this, SLOT(onDwellTimeChanged()));
connect(axis->regionAt(0), SIGNAL(regionStartChanged(AMNumber)), this, SLOT(setStart1(AMNumber)));
connect(axis->regionAt(0), SIGNAL(regionStepChanged(AMNumber)), this, SLOT(setStep1(AMNumber)));
connect(axis->regionAt(0), SIGNAL(regionEndChanged(AMNumber)), this, SLOT(setEnd1(AMNumber)));
connect(axis->regionAt(0), SIGNAL(regionTimeChanged(AMNumber)), this, SLOT(setDwellTime(AMNumber)));
}
else if (configuration_->scanAxes().size() == 2){
connect(axisStart2_, SIGNAL(editingFinished()), this, SLOT(onStart2Changed()));
connect(axisStep2_, SIGNAL(editingFinished()), this, SLOT(onStep2Changed()));
connect(axisEnd2_, SIGNAL(editingFinished()), this, SLOT(onEnd2Changed()));
connect(axis->regionAt(0), SIGNAL(regionStartChanged(AMNumber)), this, SLOT(setStart2(AMNumber)));
connect(axis->regionAt(0), SIGNAL(regionStepChanged(AMNumber)), this, SLOT(setStep2(AMNumber)));
connect(axis->regionAt(0), SIGNAL(regionEndChanged(AMNumber)), this, SLOT(setEnd2(AMNumber)));
}
}
void AMGenericStepScanConfigurationView::onAxisControlChoice2Changed()
{
if (axisControlChoice1_->currentIndex() == 0 || axisControlChoice2_->currentIndex() == 0){
axisStart2_->setEnabled(false);
axisStep2_->setEnabled(false);
axisEnd2_->setEnabled(false);
configuration_->removeControl(1);
setStart2(-1.0);
setStep2(-1.0);
setEnd2(-1.0);
}
else{
axisStart2_->setEnabled(true);
axisStep2_->setEnabled(true);
axisEnd2_->setEnabled(true);
AMControl *control = controlNameMap_.value(axisControlChoice2_->itemText(axisControlChoice2_->currentIndex()), 0);
if (control) {
configuration_->setControl(1, control->toInfo());
setStart2(control->value());
setStep2(1.0);
setEnd2(control->value()+10);
}
onStart2Changed();
onStep2Changed();
onEnd2Changed();
onDwellTimeChanged();
}
QStandardItemModel *model = qobject_cast<QStandardItemModel *>(axisControlChoice1_->model());
for (int i = 1; i < axisControlChoice1_->count(); i++)
model->item(i)->setFlags(i == axisControlChoice2_->currentIndex() ? Qt::NoItemFlags : Qt::ItemIsEnabled | Qt::ItemIsSelectable);
model->item(0)->setFlags(axisControlChoice2_->currentIndex() > 0 ? Qt::NoItemFlags : Qt::ItemIsEnabled | Qt::ItemIsSelectable);
updateScanInformation();
}
EdgeT(GeneT *geneA, GeneT *geneB, SamDataT *connA, /*SamDataT *connB,*/ uint_64 stA,
uint_64 endA, uint_64 stB, uint_64 endB, bool intr) {
Edg::v1 = new Vertex(*geneA);
Edg::v2 = new Vertex(*geneB);
conn1 = new SamDataT(*connA);
setStart1 (stA);
setEnd1 (endA);
setStart2 (stB);
setEnd2(endB);
if(intr)
setIntergenic();
hashed = pairZ(geneA->getId(), geneB->getId());
//mirror = hashThemAll(geneB, geneA);
id1 = geneA->getId();
id2 = geneB->getId();
}
