void settree(int p,int l,int r)
{
dmin[p]=prev[p]=0;
if(l==r) len[p]=hash[l]-hash[l-1];
else
{
int mid=(l+r)>>1;
settree(ls(p),l,mid);
settree(rs(p),mid+1,r);
len[p]=len[ls(p)]+len[rs(p)];
}
}
int main()
{
int n;
int T=0;
while(~scanf("%d",&n) && n!=0)
{
++T;
hcnt=segcnt=0;
double x1,y1,x2,y2;
for(int i=1;i<=n;i++)
{
scanf("%lf%lf%lf%lf",&x1,&y1,&x2,&y2);
hash[++hcnt]=x1;hash[++hcnt]=x2;
seg[++segcnt]=(Segment){x1,x2,y1,1};
seg[++segcnt]=(Segment){x1,x2,y2,-1};
}
std::sort(seg+1,seg+segcnt+1);
std::sort(hash+1,hash+hcnt+1);
settree(1,1,hcnt);
double covered=0,ans=0;
for(int i=1;i<=segcnt-1;i++)
{
covered+=add(1,1,hcnt,gethash(seg[i].l)+1,gethash(seg[i].r),seg[i].tp);
ans+=covered*(seg[i+1].h-seg[i].h);
}
printf("Test case #%d\nTotal explored area: %.2f\n\n",T,ans);
}
}
int main()
{
int n;
int T; scanf("%d",&T);
while(T--)
{
scanf("%d",&n);
hcnt=segcnt=0;
double x1,y1,x2,y2;
for(int i=1;i<=n;i++)
{
scanf("%lf%lf%lf%lf",&x1,&y1,&x2,&y2);
hash[++hcnt]=x1;hash[++hcnt]=x2;
seg[++segcnt]=(Segment){x1,x2,y1,1};
seg[++segcnt]=(Segment){x1,x2,y2,-1};
}
std::sort(seg+1,seg+segcnt+1);
std::sort(hash+1,hash+hcnt+1);
settree(1,1,hcnt);
double covered=0,ans=0;
for(int i=1;i<=segcnt-1;i++)
{
covered+=add(1,1,hcnt,gethash(seg[i].l)+1,gethash(seg[i].r),seg[i].tp);
ans+=covered*(seg[i+1].h-seg[i].h);
}
printf("%.2f\n",ans);
}
}
int main() {
gen(M1);
gen(M2);
POW1[0] = POW2[0] = 1;
OPEN[0] = {0, 0};
CLOSE[0] = {0, 0};
for (int i = 1; i < N; i++) {
POW1[i] = POW1[i - 1] * X % M1;
POW2[i] = POW2[i - 1] * X % M2;
if (i == 1) {
OPEN[i] = {(long long) '(', 1};
CLOSE[i] = {(long long) ')', 1};
} else {
OPEN[i] = OPEN[i - 1] + OPEN[1];
CLOSE[i] = CLOSE[i - 1] + CLOSE[1];
}
}
int c = getchar();
while (c <= 32) c = getchar();
n = 1;
while (c > 32) {
s[n++] = c;
c = getchar();
}
--n;
for (int i = 1; i <= n; i++) s[i + n] = s[i];
bal[0] = 0;
for (int i = 1; i <= 2 * n; i++) {
bal[i] = bal[i - 1] + (s[i] == '(' ? 1 : -1);
settree(i, bal[i]);
}
hs[0] = {0, 0};
for (int i = 1; i <= 2 * n; i++) {
hash cur = {(long long) s[i], 1};
hs[i] = hs[i - 1] + cur;
}
answer ans = {INF / 2, -1, INF / 2};
for (int start = 1; start <= n; start++) {
int minB = getmin(start - 1, start + n);
int addOpen = bal[start - 1] - minB;
int addClose = bal[start + n - 1] - minB;
answer cur = {addOpen, start, addClose};
if (cur < ans) ans = cur;
}
for (int i = 0; i < ans.addOpen; i++) putchar('(');
for (int i = 0; i < n; i++) putchar(s[ans.pos + i]);
for (int i = 0; i < ans.addClose; i++) putchar(')');
}
double shake(int nb, char** seq, char** seqname, char* ctree, options opt, char** eval_input, int nb_eval_input){
int nb2, i, j, ii, jj, k, l, *ttree[MAXNSP], **curtree, **newtree, **evaltree, nbbi, nbdclade, nbgclade, print1, print2;
int nochange, pres_grossiere=-1, l1, l2, restart_d, restart_g, oldmovedist;
int **dclade, **gclade, **newdclade, **newgclade, **ddist, **gdist, movedist, maxmovedist;
int **list_tree, lliste, *solid;
long nblist, nblistmax;
double *lgbp, *sortedlgbp, *lgbi, *bootvals, fracroot1, lkh, maxlkh, maxlcrossedbranch;
char *nom[MAXNSP], *nom2[MAXNSP], **dcladename, **gcladename, **list1, **list2, racine, *ctreenew, *ctreenew_nobl, *treedeb, *ctree1, *ctree2;
FILE* outfile1, *outfile2;
print_option trueprint, noprint;
print1=opt->print->PRINT1;
print2=opt->print->PRINT2;
noprint=check_alloc(1, sizeof(struct print_option));
noprint->PRINT3=0;
if(opt->print->PRINT2)
noprint->PRINT1=noprint->PRINT2=1;
else
noprint->PRINT1=noprint->PRINT2=0;
if(print1) noprint->PRINT0=1; else noprint->PRINT0=0;
trueprint=opt->print;
opt->print=noprint;
maxlcrossedbranch=opt->SH_MAXLCROSSED;
/* READ TREE STRING */
lgbp=(double*)check_alloc(nb+1, sizeof(double));
sortedlgbp=(double*)check_alloc(nb+1, sizeof(double));
lgbi=(double*)check_alloc(nb+1, sizeof(double));
for(i=0;i<nb+1;i++)
lgbp[i]=lgbi[i]=-1.;
solid=(int*)check_alloc(nb+1, sizeof(int));
bootvals=(double*)check_alloc(nb+1, sizeof(double));
if(nb>=MAXNSP) {printf("Too many sequences\n"); exit(EXIT_FAILURE);}
for(i=0;i<=nb;i++){
nom[i]=(char*)check_alloc(MAXLNAME+1, sizeof(char));
nom2[i]=(char*)check_alloc(MAXLNAME+1, sizeof(char));
ttree[i]=(int*)check_alloc(nb, sizeof(int));
}
list1=check_alloc(nb, sizeof(char*));
list2=check_alloc(nb, sizeof(char*));
curtree=(int**)check_alloc(nb+1, sizeof(int*));
newtree=(int**)check_alloc(nb+1, sizeof(int*));
evaltree=(int**)check_alloc(nb+1, sizeof(int*));
for(i=0;i<nb+1;i++) newtree[i]=(int*)check_alloc(nb-2, sizeof(int));
ctreenew=(char*)check_alloc(2*MAXLNAME*nb, sizeof(char));
ctree1=(char*)check_alloc(2*MAXLNAME*nb, sizeof(char));
ctree2=(char*)check_alloc(2*MAXLNAME*nb, sizeof(char));
ctreenew_nobl=(char*)check_alloc(2*MAXLNAME*nb, sizeof(char));
nb2=ctot(ctree, ttree, lgbi, lgbp, bootvals, nom, &racine, &nbbi);
if(nb2<nb){
printf("More species in sequence file than in tree file\n");
exit(EXIT_FAILURE);
}
if(nb2>nb){
printf("More species in tree file than in sequence file\n");
exit(EXIT_FAILURE);
}
/* PREPARE TREE : UNROOT, SET LEFT and RIGHT LISTS, SORT TAXA */
if(racine=='r'){
unroot(ttree, nb, lgbi, lgbp, bootvals, nom, list1, list2, &l1, &l2, &fracroot1);
}
else{
printf("Tree must be rooted\n");
exit(EXIT_FAILURE);
}
nbbi--;
if(nbbi!=nb-3){
printf("Tree must be bifurcating\n");
exit(EXIT_FAILURE);
}
for(i=0;i<nb;i++){
for(j=0;j<nb;j++){
if(samename(seqname[i], nom[j])){
curtree[i]=ttree[j];
sortedlgbp[i]=lgbp[j];
break;
}
}
}
for(i=0;i<nb-3;i++) if(bootvals[i]>opt->SH_MAXBOOTCROSSED) solid[i]=1;
ctree_noblbs(ctree, ctreenew_nobl, strlen(ctree));
/* EVALUATE INITIAL TREE */
if(print1)
printf("\nEvaluating initial tree : \n%s\n", ctreenew_nobl);
if(print2)
printf("\n");
maxlkh=maxlike(nb, seq, seqname, curtree, lgbi, sortedlgbp, nbbi, l1, list1, l2, list2, opt, NULL, NULL, NULL);
if(opt->SH_RESTART) save_current_best("current_best_tree", ctreenew_nobl, maxlkh, 1);
if(opt->SH_RESTART) save_evaluated("evaluated_trees", ctreenew_nobl, maxlkh, 1);
/* ALLOCATE SHAKE VARIABLES */
nbdclade=2*l1-1;
nbgclade=2*l2-1;
dclade=(int**)check_alloc(nbdclade, sizeof(int*));
for(i=0;i<nbdclade;i++)
dclade[i]=(int*)check_alloc(nb, sizeof(int));
gclade=(int**)check_alloc(2*nb, sizeof(int*));
for(i=0;i<nbgclade;i++)
gclade[i]=(int*)check_alloc(nb, sizeof(int));
newdclade=(int**)check_alloc(nbdclade, sizeof(int*));
for(i=0;i<nbdclade;i++)
newdclade[i]=(int*)check_alloc(nb, sizeof(int));
newgclade=(int**)check_alloc(nbgclade, sizeof(int*));
for(i=0;i<nbgclade;i++)
newgclade[i]=(int*)check_alloc(nb, sizeof(int));
ddist=(int**)check_alloc(nbdclade, sizeof(int*));
gdist=(int**)check_alloc(nbgclade, sizeof(int*));
for(i=0;i<nbdclade;i++) ddist[i]=(int*)check_alloc(nbdclade, sizeof(int));
for(i=0;i<nbgclade;i++) gdist[i]=(int*)check_alloc(nbgclade, sizeof(int));
dcladename=(char**)check_alloc(nbdclade, sizeof(char*));
gcladename=(char**)check_alloc(nbgclade, sizeof(char*));
for(i=0;i<nbdclade;i++)
dcladename[i]=(char*)check_alloc(nb*(MAXLNAME+3)+1, sizeof(char));
for(i=0;i<nbgclade;i++)
gcladename[i]=(char*)check_alloc(nb*(MAXLNAME+3)+1, sizeof(char));
nblistmax=nb*nb;
if(nblistmax<MIN_NBLISTMAX) nblistmax=MIN_NBLISTMAX;
if(nblistmax<nb_eval_input) nblistmax=nb_eval_input;
if(nblistmax>MAX_NBLISTMAX) nblistmax=MAX_NBLISTMAX;
while(1){
lliste=(nblistmax*(nb-3)+lmot-1)/lmot;
list_tree=(int**)check_alloc(nb, sizeof(int*));
for(i=0;i<nb;i++)
list_tree[i]=(int*)calloc(lliste, sizeof(int));
if(list_tree[nb-1]) break;
nblistmax/=2;
if(nblistmax==0){
printf("Not enough memory\n");
exit(EXIT_FAILURE);
}
}
/* SET LIST OF EVALUATED TREES */
if(eval_input){
nblist=0;
for(k=0;k<nb_eval_input;k++){
for(i=0;i<=nb;i++) ttree[i]=check_alloc(nb, sizeof(int));
nb2=ctot(eval_input[k], ttree, NULL, NULL, NULL, nom2, &racine, NULL);
if(racine=='r')
unroot(ttree, nb, NULL, NULL, NULL, nom2, NULL, NULL, NULL, NULL, NULL);
else{ printf("Evaluated trees must be rooted\n"); exit(EXIT_FAILURE);}
for(i=0;i<nb;i++){
for(j=0;j<nb;j++){
if(samename(seqname[i], nom2[j])){
evaltree[i]=ttree[j];
break;
}
}
}
if(deja_evalue(evaltree, nb, list_tree, nblist, nblistmax)) continue;
addtolist(evaltree, nb, list_tree, nblist, nblistmax);
nblist++;
}
printf("%d already evaluated topologies loaded\n", nblist);
}
else{
addtolist(curtree, nb, list_tree, 0, nblistmax);
nblist=1;
}
/* SHAKE */
treedeb=ctreenew;
nochange=1; movedist=0;
if(opt->SH_G>0 && opt->SH_G<nb-3)
maxmovedist=opt->SH_G;
else
maxmovedist=nb-3;
if(print1)
printf("\nStarting rearrangements\n");
do{
oldmovedist=movedist;
if(nochange==1) movedist++;
else movedist=1;
if(print1 && !(nochange==0 && oldmovedist==1)){
printf("\nCrossing %d internal branch", movedist);
if(movedist>1) printf("es");
printf("\n");
}
nochange=1;
while(1){
setclades(curtree, nb, seqname, l1, list1, l2, list2, dclade, gclade, ddist, gdist, nbdclade, nbgclade, dcladename, gcladename);
restart_d=0;
for(i=0;i<nbdclade;i++){
for(j=0;j<nbdclade;j++){
if(abs(ddist[i][j])!=movedist) continue;
if(ddist[i][j]<0) continue;
moveclade(dclade, newdclade, nbdclade, nb, ddist, i, j);
settree(newdclade, nbdclade, gclade, nbgclade, nb, newtree);
if(deja_evalue(newtree, nb, list_tree, nblist, nblistmax))
continue;
if(solid_branch_crossed(newtree, curtree, nb, solid))
continue;
addtolist(newtree, nb, list_tree, nblist, nblistmax);
nblist++;
if(print1){
printf("\nMoving %s toward %s\n", dcladename[i], dcladename[j]);
}
if(print2)
printf("\n");
lkh=maxlike(nb, seq, seqname, newtree, NULL, NULL, nbbi, l1, list1, l2, list2, opt, ctreenew, NULL, NULL);
if(lkh>maxlkh){
ctree_noblbs(ctreenew, ctreenew_nobl, strlen(ctreenew));
if(print1)
printf("New tree is optimal : \n%s\n\nRestarting rearrangements\n", ctreenew_nobl);
maxlkh=lkh;
copytree(newtree, curtree, nb);
if(opt->SH_RESTART) save_current_best("current_best_tree", ctreenew_nobl, lkh, 0);
if(opt->SH_RESTART) save_evaluated("evaluated_trees", ctreenew_nobl, lkh, 0);
restart_d=1;
nochange=0;
ctreenew=treedeb;
while(*ctreenew) {*ctreenew=0; ctreenew++; }
ctreenew=treedeb;
break;
}
else{
if(print1)
printf("No improvement:\n");
ctree_noblbs(ctreenew, ctreenew_nobl, strlen(ctreenew));
if(print1)
printf("%s\n", ctreenew_nobl);
if(opt->SH_RESTART) save_evaluated("evaluated_trees", ctreenew_nobl, lkh, 0);
}
ctreenew=treedeb;
while(*ctreenew) {*ctreenew=0; ctreenew++; }
ctreenew=treedeb;
}
if(restart_d) break;
}
if(!restart_d || movedist>1) break;
}
if(restart_d && movedist>1) continue;
while(1){
setclades(curtree, nb, seqname, l1, list1, l2, list2, dclade, gclade, ddist, gdist, nbdclade, nbgclade, dcladename, gcladename);
restart_g=0;
for(i=0;i<nbgclade;i++){
for(j=0;j<nbgclade;j++){
if(abs(gdist[i][j])!=movedist) continue;
if(gdist[i][j]<0) continue;
moveclade(gclade, newgclade, nbgclade, nb, gdist, i, j);
settree(dclade, nbdclade, newgclade, nbgclade, nb, newtree);
if(deja_evalue(newtree, nb, list_tree, nblist, nblistmax))
continue;
if(solid_branch_crossed(newtree, curtree, nb, solid))
continue;
addtolist(newtree, nb, list_tree, nblist, nblistmax);
nblist++;
if(print1){
printf("\nMoving %s toward %s\n", gcladename[i], gcladename[j]);
}
if(print2){
printf("\n");
}
lkh=maxlike(nb, seq, seqname, newtree, NULL, NULL, nbbi, l1, list1, l2, list2, opt, ctreenew, NULL, NULL);
if(lkh>maxlkh){
ctree_noblbs(ctreenew, ctreenew_nobl, strlen(ctreenew));
if(print1)
printf("New tree is optimal : \n%s\n\nRestarting rearrangements\n", ctreenew_nobl);
maxlkh=lkh;
copytree(newtree, curtree, nb);
if(opt->SH_RESTART) save_current_best("current_best_tree", ctreenew_nobl, lkh, 0);
if(opt->SH_RESTART) save_evaluated("evaluated_trees", ctreenew_nobl, lkh, 0);
restart_g=1;
nochange=0;
ctreenew=treedeb;
while(*ctreenew) {*ctreenew=0; ctreenew++; }
ctreenew=treedeb;
break;
}
else{
if(print1)
printf("No improvement:\n");
ctree_noblbs(ctreenew, ctreenew_nobl, strlen(ctreenew));
if(print1)
printf("%s\n", ctreenew_nobl);
if(opt->SH_RESTART) save_evaluated("evaluated_trees", ctreenew_nobl, lkh, 0);
}
ctreenew=treedeb;
while(*ctreenew) {*ctreenew=0; ctreenew++; }
ctreenew=treedeb;
}
if(restart_g) break;
}
if(!restart_g || movedist>1) break;
}
} while(nochange==0 || movedist!=maxmovedist);
/* FINAL EVALUATION */
if(print1)
printf("\nFinal evaluation\n");
if(print2)
printf("\n");
opt->print=trueprint;
maxlkh=maxlike(nb, seq, seqname, curtree, NULL, NULL, nbbi, l1, list1, l2, list2, opt, NULL, ctree1, ctree2);
if(ctree1){
outfile1=fopen("treefile.eqgc", "w");
outfile2=fopen("treefile.ndgc", "w");
if(outfile1==NULL || outfile2==NULL){ printf("Cannot write tree file\n"); exit(EXIT_FAILURE); }
fprintf(outfile1, "%s\n", ctree1);
fprintf(outfile2, "%s\n", ctree2);
if(print1){
printf("Tree is written into files : treefile.eqgc (equilibrium G+C content)\n");
printf(" treefile.ndgc (G+C content at each node)\n\n");
}
}
free(lgbp); free(sortedlgbp); free(lgbi);
free(bootvals);
for(i=0;i<nb;i++){ free(nom[i]); free(ttree[i]); }
free(list1); free(list2); free(curtree);
return maxlkh;
}
