struct snp125CodingCoordless *snp125CodingCoordlessLoad(char **row)
/* Load a snp125CodingCoordless from row fetched with select * from snp125CodingCoordless
* from database. Dispose of this with snp125CodingCoordlessFree(). */
{
struct snp125CodingCoordless *ret;
AllocVar(ret);
ret->alleleCount = sqlSigned(row[3]);
ret->name = cloneString(row[0]);
ret->transcript = cloneString(row[1]);
ret->frame = sqlEnumParse(row[2], values_frame, &valhash_frame);
{
int sizeOne;
sqlUshortDynamicArray(row[4], &ret->funcCodes, &sizeOne);
assert(sizeOne == ret->alleleCount);
}
{
int sizeOne;
sqlStringDynamicArray(row[5], &ret->alleles, &sizeOne);
assert(sizeOne == ret->alleleCount);
}
{
int sizeOne;
sqlStringDynamicArray(row[6], &ret->codons, &sizeOne);
assert(sizeOne == ret->alleleCount);
}
{
int sizeOne;
sqlStringDynamicArray(row[7], &ret->peptides, &sizeOne);
assert(sizeOne == ret->alleleCount);
}
return ret;
}
void gbWarnStaticLoad(char **row, struct gbWarn *ret)
/* Load a row from gbWarn table into ret. The contents of ret will
* be replaced at the next call to this function. */
{
safecpy(ret->acc, sizeof(ret->acc), row[0]);
ret->reason = sqlEnumParse(row[1], values_reason, &valhash_reason);
}
void symTestStaticLoad(char **row, struct symTest *ret)
/* Load a row from symTest table into ret. The contents of ret will
* be replaced at the next call to this function. */
{
ret->id = sqlSigned(row[0]);
ret->sex = sqlEnumParse(row[1], values_sex, &valhash_sex);
ret->skills = sqlSetParse(row[2], values_skills, &valhash_skills);
}
struct gbWarn *gbWarnLoad(char **row)
/* Load a gbWarn from row fetched with select * from gbWarn
* from database. Dispose of this with gbWarnFree(). */
{
struct gbWarn *ret;
AllocVar(ret);
safecpy(ret->acc, sizeof(ret->acc), row[0]);
ret->reason = sqlEnumParse(row[1], values_reason, &valhash_reason);
return ret;
}
struct symTest *symTestLoad(char **row)
/* Load a symTest from row fetched with select * from symTest
* from database. Dispose of this with symTestFree(). */
{
struct symTest *ret;
AllocVar(ret);
ret->id = sqlSigned(row[0]);
ret->sex = sqlEnumParse(row[1], values_sex, &valhash_sex);
ret->skills = sqlSetParse(row[2], values_skills, &valhash_skills);
return ret;
}
void txEdgeBedStaticLoad(char **row, struct txEdgeBed *ret)
/* Load a row from txEdgeBed table into ret. The contents of ret will
* be replaced at the next call to this function. */
{
ret->chrom = row[0];
ret->chromStart = sqlSigned(row[1]);
ret->chromEnd = sqlSigned(row[2]);
ret->name = row[3];
ret->score = sqlSigned(row[4]);
safecpy(ret->strand, sizeof(ret->strand), row[5]);
safecpy(ret->startType, sizeof(ret->startType), row[6]);
ret->type = sqlEnumParse(row[7], values_type, &valhash_type);
safecpy(ret->endType, sizeof(ret->endType), row[8]);
}
struct txEdgeBed *txEdgeBedLoad(char **row)
/* Load a txEdgeBed from row fetched with select * from txEdgeBed
* from database. Dispose of this with txEdgeBedFree(). */
{
struct txEdgeBed *ret;
AllocVar(ret);
ret->chrom = cloneString(row[0]);
ret->chromStart = sqlSigned(row[1]);
ret->chromEnd = sqlSigned(row[2]);
ret->name = cloneString(row[3]);
ret->score = sqlSigned(row[4]);
safecpy(ret->strand, sizeof(ret->strand), row[5]);
safecpy(ret->startType, sizeof(ret->startType), row[6]);
ret->type = sqlEnumParse(row[7], values_type, &valhash_type);
safecpy(ret->endType, sizeof(ret->endType), row[8]);
return ret;
}
unsigned sqlEnumComma(char **pS, char **values, struct hash **valHashPtr)
/* Return enum at *pS. (Either quoted or not.) Advance *pS. */
{
return sqlEnumParse(sqlGetOptQuoteString(pS), values, valHashPtr);
}
