MRFRegistrationDisplay::MRFRegistrationDisplay(QWidget *parent)
: QDialog(parent)
{
// set some defualt values
this->gridSpacing = 6.0;
this->xGridOrigin = 110;
this->yGridOrigin = 70;
this->xGridSize = 75;
this->yGridSize = 75;
this->resolutionLevels = 3;
this->labelSteps = 5;
this->labelInc = 0.33;
this->maxDisplacement = this->gridSpacing * 0.4;
this->useSparseSampling = true;
this->optimiserIterations = 5;
this->regularisationAmount = 0.1;
this->metricType = NCC;
this->mitkImageSeries = NULL;
this->setupUi(this);
QFont courier("Courier", 12, QFont::Normal);
this->registrationTextOutput->setFont(courier);
connect(this->startRegistrationButton, SIGNAL(pressed()), this, SLOT(startRegistration()));
}
AbstractDBusInterface::AbstractDBusInterface(string interfaceName, string objectPath,
GDBusConnection* connection)
: mInterfaceName(interfaceName), mObjectPath(objectPath), mConnection(connection)
{
interfaceMap[interfaceName] = this;
startRegistration();
}
AbstractDBusInterface::AbstractDBusInterface(string interfaceName, string objectName,
GDBusConnection* connection)
: mInterfaceName(interfaceName), mConnection(connection), mPropertyName(objectName), supported(false), zoneFilter(Zone::None), mTime(0), regId(0)
{
startRegistration();
mObjectPath = "/" + objectName;
}
bool MRFRegistration2DParametersWidget::initialise(mitk::DataStorage::Pointer storage)
{
// Populate the combo boxes with the data
//
//
//
mitk::DataStorage::SetOfObjects::ConstPointer images = storage->GetAll();
for(unsigned int i = 0; i < images->size(); i++)
{
// check that the item is an image
mitk::Image::Pointer image = mitk::Image::New();
image = dynamic_cast<mitk::Image*>(images->GetElement(i)->GetData());
if(image)
{
// now break out the slices and times steps
int timeSteps = image->GetTimeSteps();
for(int t = 0; t < timeSteps; t++)
{
// now break out the z slices
int zdims = image->GetDimension(2);
for(int z = 0; z < zdims; z++)
{
// we now need to split them up so as to access the
// 2d slices
//
//
//
mitk::ImageSliceSelector::Pointer timeImageSelector = mitk::ImageSliceSelector::New();
timeImageSelector->SetInput(image);
timeImageSelector->SetTimeNr(t);
timeImageSelector->SetSliceNr(z);
try
{
timeImageSelector->Update();
}
catch(mitk::Exception &e)
{
std::cout << "Error in extracting a slice" << std::endl;
std::cout << e << std::endl;
break;
}
mitk::Image::Pointer imageSlice = timeImageSelector->GetOutput();
imageSlice->SetGeometry(image->GetGeometry(0));
imageSlice->Update();
imageHolder.push_back(imageSlice);
// add an entry into the combo boxes
//
//
//
QString entryName = QString::fromStdString(images->GetElement(i)->GetName()) + " z: " + QString::number(z) + " t: " + QString::number(t);
this->fixedImageSelector->addItem(entryName);
this->movingImageSelector->addItem(entryName);
}
}
}
}
// connect up all the buttons
connect(this->makeGridButton, SIGNAL(pressed()), this, SLOT(updateGridImage()));
connect(this->linkDisplacementToGrid, SIGNAL(pressed()), this, SLOT(setMaxDisplacementToGrid()));
connect(this->resetParamsButton, SIGNAL(pressed()), this, SLOT(resetParams()));
connect(this->startRegistrationButton, SIGNAL(pressed()), this, SLOT(startRegistration()));
return true;
}
