struct slName *annoAssemblySeqNames(struct annoAssembly *aa)
/* Return a list of sequence names in this assembly. */
{
struct slName *seqNames = twoBitSeqNames(aa->twoBitPath);
slSort(&seqNames, slNameCmp);
return seqNames;
}
void addTwoBit(char *file, struct hash *fileHash, struct hash *seqHash)
/* Add a 2bit file to hashes. */
{
struct twoBitFile *lf = twoBitOpen(file);
char *rFile = hashStoreName(fileHash, file);
struct slName *names = twoBitSeqNames(file);
struct slName *name;
for(name = names;name;name = name->next)
{
struct seqFilePos *sfp;
AllocVar(sfp);
hashAddSaveName(seqHash, name->name, sfp, &sfp->name);
sfp->file = rFile;
sfp->isTwoBit = TRUE;
sfp->pos = 0;
}
slFreeList(&names);
twoBitClose(&lf);
}
