Target_Reader_Ptr
Target_Reader::create_reader(const URI & target_source)
{
Filepath path = uri_to_filename(target_source);
if (path != "")
{
if (boost::filesystem::is_directory(path))
{
Filepath target_filepath = path / TARGET_FILENAME;
if (boost::filesystem::is_regular(target_filepath))
{
return Target_Reader_Ptr
(new Target_File_Reader(target_filepath));
}
}
else if (boost::filesystem::extension(path) == ".target")
{
return Target_Reader_Ptr
(new Target_File_Reader(path));
}
}
// No suitable reader found
log_message("Target_Reader: No suitable reader for circuit_source: " +
target_source, SEVERE_LEVEL);
return Target_Reader_Ptr();
}
static void confirm_delete (void)
{
int playlist = aud_playlist_get_active ();
int entry_count = aud_playlist_entry_count (playlist);
for (int i = 0; i < entry_count; i ++)
{
if (! aud_playlist_entry_get_selected (playlist, i))
continue;
char * uri = aud_playlist_entry_get_filename (playlist, i);
char * filename = uri_to_filename (uri);
if (filename)
{
if (aud_get_bool ("delete_files", "use_trash"))
move_to_trash (filename);
else
really_delete (filename);
str_unref (filename);
}
else
{
SPRINTF (error, _("Error deleting %s: not a local file."), uri);
aud_interface_show_error (error);
}
str_unref (uri);
}
aud_playlist_delete_selected (playlist);
}
void Mesh_File_Reader::load(
Meshes & final_meshes,
const Cell_Target & cells,
const URI & circuit_source,
bool load_vertices,
bool load_triangles,
bool load_mapping,
bool load_triangle_strips)
{
Meshes meshes;
boost::filesystem::path mvd_file = uri_to_filename(circuit_source);
if (mvd_file == "" || boost::filesystem::extension(mvd_file) != ".mvd2")
{
throw_exception(Bad_Data_Source("Loading meshes: circuit_source '" +
circuit_source + "' "),
FATAL_LEVEL, __FILE__, __LINE__);
}
MVD_File_Parser mvd_parser(mvd_file);
mvd_parser.parse_file(cells);
for (Cell_Target::iterator cell_gid = cells.begin();
cell_gid != cells.end();
++cell_gid)
{
MVD_Cell_Index index = mvd_parser.cell_index(*cell_gid);
if (index == UNDEFINED_MVD_CELL_INDEX)
{
std::stringstream msg;
msg << "Loading meshes: bad cell target, neuron gid "
<< *cell_gid << " not in mvd file '" << mvd_file << "'";
throw_exception(Bad_Data(msg.str()),
FATAL_LEVEL, __FILE__, __LINE__);
}
const Label & label = mvd_parser.morphology_names()[index];
if (meshes.find(label) == meshes.end())
{
insert_new_or_updated(label, final_meshes, meshes,
load_vertices, load_triangles,
load_triangle_strips, load_mapping);
}
}
// Final insertion from local container to result
for (Meshes::iterator i = meshes.begin();
i != meshes.end();
++i)
{
// This insertion replaces old existing meshes with its updated
// version also
final_meshes.insert(i.label(), i.ptr());
}
}
gchar * get_associated_image_file (const gchar * filename)
{
if (strncmp (filename, "file://", 7))
return NULL;
gchar * unesc = uri_to_filename (filename);
if (! unesc)
return NULL;
gchar * path = g_path_get_dirname (unesc);
gchar * base = g_path_get_basename (unesc);
gchar * image_file = fileinfo_recursive_get_image (path, base, 0);
g_free (unesc);
g_free (path);
g_free (base);
return image_file;
}
static void * local_fopen (const char * uri, const char * mode)
{
bool_t update;
mode_t mode_flag;
int handle;
update = (strchr (mode, '+') != NULL);
switch (mode[0])
{
case 'r':
mode_flag = update ? O_RDWR : O_RDONLY;
break;
case 'w':
mode_flag = (update ? O_RDWR : O_WRONLY) | O_CREAT | O_TRUNC;
break;
case 'a':
mode_flag = (update ? O_RDWR : O_WRONLY) | O_CREAT | O_APPEND;
break;
default:
return NULL;
}
#ifdef O_CLOEXEC
mode_flag |= O_CLOEXEC;
#endif
#ifdef _WIN32
mode_flag |= O_BINARY;
#endif
char * filename = uri_to_filename (uri);
if (! filename)
return NULL;
if (mode_flag & O_CREAT)
#ifdef S_IRGRP
handle = open (filename, mode_flag, S_IRUSR | S_IWUSR | S_IRGRP | S_IROTH);
#else
handle = open (filename, mode_flag, S_IRUSR | S_IWUSR);
#endif
else
char * get_associated_image_file (const char * filename)
{
char * image_uri = NULL;
char * local = uri_to_filename (filename);
char * base = local ? last_path_element (local) : NULL;
if (local && base)
{
char * include = get_str (NULL, "cover_name_include");
char * exclude = get_str (NULL, "cover_name_exclude");
SearchParams params = {
.basename = base,
.include = str_list_to_index (include, ", "),
.exclude = str_list_to_index (exclude, ", ")
};
str_unref (include);
str_unref (exclude);
SNCOPY (path, local, base - 1 - local);
char * image_local = fileinfo_recursive_get_image (path, & params, 0);
if (image_local)
image_uri = filename_to_uri (image_local);
str_unref (image_local);
index_free_full (params.include, (IndexFreeFunc) str_unref);
index_free_full (params.exclude, (IndexFreeFunc) str_unref);
}
str_unref (local);
return image_uri;
}
static bool_t playlist_save_pls (const char * filename, VFSFile * file,
const char * title, Index * filenames, Index * tuples)
{
int entries = index_count (filenames);
vfs_fprintf (file, "[playlist]\n");
vfs_fprintf (file, "NumberOfEntries=%d\n", entries);
for (int count = 0; count < entries; count ++)
{
const char * filename = index_get (filenames, count);
char * fn;
if (! strncmp (filename, "file://", 7))
fn = uri_to_filename (filename);
else
fn = strdup (filename);
vfs_fprintf (file, "File%d=%s\n", 1 + count, fn);
free (fn);
}
return TRUE;
}
void
on_skin_view_drag_data_received(GtkWidget * widget,
GdkDragContext * context,
gint x, gint y,
GtkSelectionData * selection_data,
guint info, guint time,
gpointer user_data)
{
const gchar * data = (const gchar *) gtk_selection_data_get_data (selection_data);
g_return_if_fail (data);
const gchar * end = strchr (data, '\r');
if (! end) end = strchr (data, '\n');
if (! end) end = data + strlen (data);
gchar * path = g_strndup (data, end - data);
if (strstr (path, "://"))
{
gchar * path2 = uri_to_filename (path);
if (path2)
{
g_free (path);
path = path2;
}
}
if (file_is_archive(path)) {
if (! active_skin_load (path))
return;
skin_install_skin(path);
if (skin_view)
skin_view_update ((GtkTreeView *) skin_view);
}
}
void describe_song (const char * name, const Tuple * tuple, char * * _title,
char * * _artist, char * * _album)
{
/* Common folder names to skip */
static const char * const skip[] = {"music"};
char * title = get_nonblank_field (tuple, FIELD_TITLE);
char * artist = get_nonblank_field (tuple, FIELD_ARTIST);
char * album = get_nonblank_field (tuple, FIELD_ALBUM);
if (title && artist && album)
{
DONE:
* _title = title;
* _artist = artist;
* _album = album;
return;
}
if (! strncmp (name, "file:///", 8))
{
char * filename = uri_to_filename (name);
if (! filename)
goto DONE;
char * base, * first, * second;
split_filename (skip_top_folders (filename), & base, & first, & second);
if (! title)
title = str_get (base);
for (int i = 0; i < G_N_ELEMENTS (skip); i ++)
{
if (first && ! g_ascii_strcasecmp (first, skip[i]))
first = NULL;
if (second && ! g_ascii_strcasecmp (second, skip[i]))
second = NULL;
}
if (first)
{
if (second && ! artist && ! album)
{
artist = str_get (second);
album = str_get (first);
}
else if (! artist)
artist = str_get (first);
else if (! album)
album = str_get (first);
}
free (filename);
}
else
{
char buf[strlen (name) + 1];
memcpy (buf, name, sizeof buf);
if (! title)
{
title = str_get_decoded (stream_name (buf));
if (! title)
title = str_get_decoded (buf);
}
else if (! artist)
artist = str_get_decoded (stream_name (buf));
else if (! album)
album = str_get_decoded (stream_name (buf));
}
goto DONE;
}
Compartment_Report_Binary_File_Reader::Compartment_Report_Binary_File_Reader
(const Report_Specification & specs)
: _sequence_start_frame(0),
_frame_counter(0),
_frame_skip(1.0f),
_current_frame(UNDEFINED_FRAME_NUMBER)
{
static Report_Specialization_Register<
Compartment_Report_Binary_File_Reader,
float
> register_float_buffer;
namespace fs = boost::filesystem;
Filepath path = uri_to_filename(specs.data_source());
Filepath filename;
enum Binary_Type
{
Multi_Split,
Unknown
};
Binary_Type binary_type = Unknown;
// Checking which type of file
if (fs::is_directory(path))
{
if (fs::exists((filename = path / (specs.label() + ".rep"))))
{
binary_type = Multi_Split;
}
else if (fs::exists((filename = path / (specs.label() + ".bbp"))))
{
binary_type = Multi_Split;
}
}
else if (fs::exists(path))
{
filename = path;
if (fs::extension(path) == ".rep")
{
binary_type = Multi_Split;
}
else if (fs::extension(path) == ".bbp")
{
binary_type = Multi_Split;
}
}
if (binary_type == Multi_Split)
{
_parser.open(filename.string());
}
else
{
throw_exception(Bad_Data("Compartment_Binary_File_Report_Reader: "
"no proper binary file for " +
specs.data_source() + " found"),
FATAL_LEVEL, __FILE__, __LINE__);
}
}
Compartment_Report_HDF5_File_Reader::Compartment_Report_HDF5_File_Reader
(const Report_Specification & specs) :
_path(uri_to_filename(specs.data_source())),
_report_name(specs.label()),
_sequence_start_frame(0),
_frame_counter(0),
_frame_skip(1.0),
_current_framestamp(UNDEFINED_FRAME_NUMBER)
{
namespace fs = boost::filesystem;
static Report_Specialization_Register<
Compartment_Report_HDF5_File_Reader,
float
> register_float_buffer;
// Finding a suitable cell name from which has a h5 inside the search path.
bool h5_file_found = false;
if (!fs::is_directory(_path))
{
throw_exception(
IO_Error("Compartment_Report_HDF5_File_Reader: data source "
"is not a directory: " + specs.data_source()),
FATAL_LEVEL, __FILE__, __LINE__);
}
fs::directory_iterator entry(_path), end_entry;
Cell_GID cell_GID = UNDEFINED_CELL_GID;
while (cell_GID == UNDEFINED_CELL_GID && entry != end_entry)
{
fs::path filename = entry->path();
std::string cell_name = fs::basename(filename);
char * endptr;
if (fs::is_regular(entry->status()) &&
fs::extension(filename) == ".h5" &&
// Checking if name matches a[0-9]+ pattern and storing the GID
cell_name.size() > 1 && cell_name[0] == 'a' &&
(cell_GID = strtol(&cell_name[1], &endptr, 10)) > 0 &&
*endptr == '\0')
h5_file_found = true;
++entry;
}
if (cell_GID == UNDEFINED_CELL_GID)
{
throw_exception(
Bad_Data("Compartment_Report_HDF5_File_Reader: source path "
"doesn't contain any valid .h5 file" +
specs.data_source()), FATAL_LEVEL, __FILE__, __LINE__);
}
// Not catching any exception here
H5ID file, dataset;
open_data_set(cell_GID, "data", file, dataset);
float start_time, end_time, delta_time;
if (// Trying to read attributes
!read_attribute("tstart", dataset, start_time) ||
!read_attribute("tstop", dataset, end_time) ||
!read_attribute("Dt", dataset, delta_time) ||
// And checking them
start_time != specs.start_time() ||
end_time != specs.end_time() ||
delta_time != specs.timestep())
{
/*!
\todo Exception commented because the forward_skip is not taken into
account in the HDF5. SL - 24.07.08
throw_exception(
Bad_Data("Compartment_Report_HDF5_File_Reader: inconsistent"
" report metadata found for '" + specs.label() +
"' in path " + specs.data_source()),
FATAL_LEVEL, __FILE__, __LINE__);
*/
}
}
