/*!
* Writes entire VTK file (headers and data).
*/
void VTK::write( ){
getMissingMetaData() ;
calcAppendedOffsets() ;
writeMetaData() ;
writeData() ;
if( nr_procs > 1 && my_proc == 0) writeCollection() ;
fh.incrementCounter() ;
return ;
};
void writeDocument(Document* doc) {
int n;
startSBOLDocument();
// write collections
Collection* col;
for (n=0; n<getNumCollections(doc); n++) {
col = getNthCollection(doc, n);
if (!alreadyProcessed((void *)col))
writeCollection(col);
}
// write components
DNAComponent* com;
for (n=0; n<getNumDNAComponents(doc); n++) {
com = getNthDNAComponent(doc, n);
if (!alreadyProcessed((void *)com))
writeDNAComponent(com);
}
// At this point there shouldn't be anything left.
// But in case there are orphaned DNASequences or
// SequenceAnnotations, SBOL will write them out anyway
// and fail the schema validation.
// write orphaned sequences
DNASequence* seq;
for (n=0; n<getNumDNASequences(doc); n++) {
seq = getNthDNASequence(doc, n);
if (!alreadyProcessed((void *)seq))
writeDNASequence(seq);
}
// write orphaned sequence annotations
SequenceAnnotation* ann;
for (n=0; n<getNumSequenceAnnotations(doc); n++) {
ann = getNthSequenceAnnotation(doc, n);
if (!alreadyProcessed((void *)ann))
writeSequenceAnnotation(ann);
}
endSBOLDocument();
}
