void FileImportExtension::processLine(QTextStream *in, Molecule *mol)
{
// First truncate the line, remove trailing white space and check
QString line = in->readLine();
QString key = line;
key = key.trimmed();
if (key == "%FLAG BONDS_WITHOUT_HYDROGEN") {
qDebug() << "Reading in bonds...";
line = in->readLine(); // Throw away this line
line = "";
QStringList list;
while (line[0] != '%') {
line = in->readLine();
list += line.split(' ', QString::SkipEmptyParts);
if (list.size() == 30) {
for (int i = 0; i <= 27; i += 3) {
Bond *bond = mol->addBond();
bond->setAtoms(list.at(i).toInt()/3, list.at(i+1).toInt()/3);
//bond->setOrder(list.at(i+2).toInt());
}
list.clear();
}
}
}
}
