void CGridAnalysis::UpdateGrid(
COARfile *pFile, COARsampleSort *pSort,
int nLabelType,
int nLabelTypeName,
const wxDateTime *pHistory,
wxDC *pDC)
{
nwxGridBatch xBatch(this);
wxDC *pDCuse = (pDC != NULL) ? pDC : GetDC();
DCholder xx(this,pDCuse);
wxString sChannel;
wxString sCell;
int iRow;
int nCol;
int nReviewCount;
int nAcceptCount;
int nReviewNeeded;
int nAcceptNeeded;
size_t nRowCount = pSort->GetCount();
size_t nAlleleColCount = pFile->GetLocusCount();
size_t i;
COARlocus *pLocus;
COARsample *pSample;
const COARmessages *pMsgs = pFile->GetMessages();
GRID_FLAG flagBase;
GRID_FLAG flag;
bool bAlert;
bool bEdited;
bool bSampleHasAlert;
bool bSampleEdited;
bool bNeedsAttention;
bool bSampleDisabled;
m_nLabelSize = 0;
m_nLabelType = nLabelTypeName;
#if 0
// moved to next loop
// Set up row labels
for(iRow = 0; iRow < (int)nRowCount; ++iRow)
{
pSample = pSort->GetSample((size_t)iRow);
sName = pSample->GetName();
if(pSample->IsSampleLevelEdited(pFile->GetMessages(),pHistory))
{
sName.Append(COARsample::g_sCellChannelEdited);
}
SetRowLabel(iRow,sName);
}
#endif
// set up cells
pFile->GetReviewerCounts(&nReviewNeeded,&nAcceptNeeded,CLabReview::REVIEW_SAMPLE);
for(iRow = 0; iRow < (int)nRowCount; ++iRow)
{
// setup sample info
flagBase = GRID_NORMAL;
bNeedsAttention = false;
pSample = pSort->GetSample((size_t)iRow);
bSampleHasAlert = pSample->HasAnyAlerts(pMsgs,pHistory);
bSampleEdited = pSample->IsEdited(pMsgs,pHistory);
bSampleDisabled = pSample->IsDisabled(pHistory);
const COARsampleReviewAccept &accept(pSample->GetAcceptance());
const COARsampleReviewAccept &review(pSample->GetReviews());
if(bSampleDisabled)
{
flagBase |= GRID_DISABLED;
}
else
{
if(bSampleHasAlert)
{
flagBase |= GRID_ALERT_SAMPLE;
}
if(bSampleEdited)
{
flagBase |= GRID_EDITED_SAMPLE;
}
}
// Setup Row Label for sample
bEdited = pSample->IsSampleLevelEdited(pMsgs,pHistory);
bAlert = pSample->HasSampleAlert(pMsgs,pHistory);
nAcceptCount = accept.GetSampleCount(pHistory);
nReviewCount = review.GetSampleCount(pHistory);
_SetupCellFlag(
flagBase,
bSampleDisabled,bEdited,bAlert,
nAcceptCount, nAcceptNeeded,
nReviewCount, nReviewNeeded,
&flag,&bNeedsAttention);
SetupRowLabel(pSample,iRow,nLabelTypeName,bEdited,bNeedsAttention);
// ILS alert column
bAlert = bSampleHasAlert && pSample->HasILSAlert(pMsgs,pHistory);
bEdited = pSample->IsCellILSEdited(pMsgs,pHistory);
nAcceptCount = accept.GetILSCount(pHistory);
nReviewCount = review.GetILSCount(pHistory);
pFile->GetReviewerCounts(&nReviewNeeded,&nAcceptNeeded,CLabReview::REVIEW_ILS);
_SetupCellFlag(
flagBase,
bSampleDisabled,bEdited,bAlert,
nAcceptCount, nAcceptNeeded,
nReviewCount, nReviewNeeded,
&flag,&bNeedsAttention);
SetCellValue(iRow,CFrameAnalysis::ILS_COLUMN,pSample->GetCellILS(pMsgs,pHistory));
SetCellStyle(
iRow,CFrameAnalysis::ILS_COLUMN,flag);
// channel alert column
sChannel = pSample->GetCellChannel(pMsgs,pHistory);
bAlert = bSampleHasAlert && COARsample::HasChannelAlert(sChannel);
bEdited = bSampleEdited && pSample->IsCellChannelEdited(pMsgs,pHistory);
nAcceptCount = accept.GetChannelCount(pHistory);
nReviewCount = review.GetChannelCount(pHistory);
pFile->GetReviewerCounts(&nReviewNeeded,&nAcceptNeeded,CLabReview::REVIEW_CHANNEL);
_SetupCellFlag(
flagBase,
bSampleDisabled,bEdited,bAlert,
nAcceptCount, nAcceptNeeded,
nReviewCount, nReviewNeeded,
&flag,&bNeedsAttention);
SetCellValue(iRow,CFrameAnalysis::CHANNEL_ALERT_COLUMN,sChannel);
SetCellStyle(iRow,CFrameAnalysis::CHANNEL_ALERT_COLUMN,flag);
SetReadOnly(iRow,CFrameAnalysis::ILS_COLUMN,true);
SetReadOnly(iRow,CFrameAnalysis::CHANNEL_ALERT_COLUMN,true);
SetReadOnly(iRow,CFrameAnalysis::STATUS_COLUMN,true);
pFile->GetReviewerCounts(&nReviewNeeded,&nAcceptNeeded,CLabReview::REVIEW_LOCUS);
for(i = 0, nCol = CFrameAnalysis::FIRST_LOCUS_COLUMN;
i < nAlleleColCount;
++i, ++nCol)
{
SetReadOnly(iRow,nCol,true);
pLocus = pSample->FindLocus(pFile->GetLocusName(i));
if(pLocus != NULL)
{
sCell = pLocus->GetCell(nLabelType,pHistory);
bAlert = bSampleHasAlert && pLocus->HasAlerts(pMsgs,pHistory);
const COARchannel *pChannel =
pFile->GetChannelFromLocus(pLocus->GetName());
int nChannel = pChannel->GetChannelNr();
nAcceptCount = pLocus->GetAcceptanceCount(pHistory);
nReviewCount = pLocus->GetReviewCount(pHistory);
bEdited = pLocus->HasBeenEdited(
pMsgs,pSample,nChannel,pHistory);
_SetupCellFlag(flagBase,
bSampleDisabled,bEdited,bAlert,
nAcceptCount,nAcceptNeeded,
nReviewCount,nReviewNeeded,
&flag,&bNeedsAttention);
if(sCell.IsEmpty())
{
if(bAlert)
{
sCell = _T("?");
}
else if(bEdited)
{
sCell = COARsample::g_sCellChannelEdited;
}
}
SetCellValue(iRow,nCol,sCell);
SetCellStyle(iRow,nCol,flag);
}
else
{
SetCellValue(iRow,nCol,wxEmptyString);
SetCellStyle(iRow,nCol,flagBase);
}
}
// setup control cell
SetReadOnly(iRow,nCol,true);
SetCellValue(iRow,nCol,pSample->GetPositiveControl());
SetCellStyle(iRow,nCol,flagBase);
// setup status cell
SetReadOnly(iRow,CFrameAnalysis::STATUS_COLUMN,true);
if(bSampleDisabled)
{
SetCellValue(iRow,CFrameAnalysis::STATUS_COLUMN,_T(""));
SetCellStyle(iRow,CFrameAnalysis::STATUS_COLUMN,flagBase);
}
else
{
CParmOsirisGlobal parm;
const wxColour &clFg(parm->GetStatusForeground(bNeedsAttention));
const wxColour &clBg(parm->GetStatusBackground(bNeedsAttention));
const wxString &s(
bNeedsAttention ? g_sStatusNeedsAttention : g_sStatusOK);
SetCellValue(iRow,CFrameAnalysis::STATUS_COLUMN,s);
SetCellFont(iRow,CFrameAnalysis::STATUS_COLUMN,g_fontStatus);
SetCellBackgroundColour(iRow,CFrameAnalysis::STATUS_COLUMN,clBg);
SetCellTextColour(iRow,CFrameAnalysis::STATUS_COLUMN,clFg);
SetCellAlignment(
iRow,CFrameAnalysis::STATUS_COLUMN,
wxALIGN_CENTRE,wxALIGN_CENTRE);
SetCellAlignment(
iRow,CFrameAnalysis::ILS_COLUMN,
wxALIGN_CENTRE,wxALIGN_CENTRE);
}
}
AutoSize();
UpdateLabelSize();
}
bool CGridCMF::TransferDataFromGrid(
const wxString &sDefaultSpecimen,
COARsample2CMFSpecimen *pMap,
vector<wxString> *pMsgs)
{
wxString s;
wxString sMsg;
size_t nRows = m_vpSample.size();
size_t i;
COARsample *pSample;
nwxXmlCMFSpecimen *pCMFSpecimen;
bool bRtn = true;
bool bExclude;
for(i = 0; i < nRows; i++)
{
bExclude = GetBoolValue((int)i,EXCLUDE);
pSample = m_vpSample.at(i);
pCMFSpecimen = pMap->Find(pSample);
if(pCMFSpecimen == NULL)
{
if(!bExclude)
{
bRtn = false;
s = GetCellValue((int)i,SAMPLE);
if(s.IsEmpty())
{
s = pSample->GetName();
}
sMsg = "Internal error:\nCannot find specimen, ";
sMsg.Append(s);
sMsg.Append(", in CMF file");
pMsgs->push_back(sMsg);
}
}
else if(bExclude)
{
pCMFSpecimen->SetExclude(true);
}
else
{
pCMFSpecimen->SetExclude(false);
s = GetCellValue((int)i,SAMPLE);
if( (!s.IsEmpty()) && (s != pSample->GetName()) )
{
pCMFSpecimen->SetSpecimenID(s);
}
s = GetCellValue((int)i,SPECIMEN_TYPE);
if(s.IsEmpty() || !s.Cmp(DEFAULT))
{
s = sDefaultSpecimen;
}
pCMFSpecimen->SetSpecimenCategory(s);
s = GetCellValue((int)i,SOURCE_ID);
if(!s.IsEmpty())
{
pCMFSpecimen->SetSourceID(s);
}
s = GetCellValue((int)i,CASE_ID);
if(!s.IsEmpty())
{
pCMFSpecimen->SetCaseID(s);
}
s = GetCellValue((int)i,COMMENT);
if(!s.IsEmpty())
{
pCMFSpecimen->SetSpecimenComment(s);
}
pCMFSpecimen->SetPartial(GetBoolValue((int)i,PARTIAL));
}
}
return bRtn;
}
CGridCMF::CGridCMF(
CDialogCMF *parent,
wxWindowID id,
COARfile *pFile,
COARsampleSort *pSort)
: _CGridEdit(parent,id,false),
m_pParent(parent),
m_pFile(pFile),
m_pSort(pSort)
{
wxString s;
vector<int> vnSample;
COARsample *pSample;
size_t n = m_pFile->GetSampleCount();
size_t i;
int j = 0;
m_vpSample.reserve(n);
vnSample.reserve(n);
// a little overkill because of ladders and controls
for(i = 0; i < n; i++)
{
j++;
pSample = m_pSort->GetSample(i);
if(pSample->IsSampleType() && !pSample->IsDisabled())
{
m_vpSample.push_back(pSample);
vnSample.push_back(j);
}
}
n = m_vpSample.size();
if(!n)
{
CreateGrid(1,1);
SetCellValue(0,0,"There are no samples");
SetReadOnly(0,0,true);
AutoSize();
}
else
{
int ii;
CreateGrid((int)n, (int)COLUMN_COUNT);
SetRowLabelAlignment(wxALIGN_LEFT,wxALIGN_CENTRE);
for(i = 0; i < n; i++)
{
ii = (int)i;
pSample = m_vpSample.at(i);
s = CGridAnalysis::FormatRowLabel(
vnSample.at(i), (int)n, pSample->GetName());
SetRowLabelValue((int)i,s);
SetBoolCell(ii,EXCLUDE);
SetBoolCell(ii,PARTIAL);
SetCellEditor(ii,SPECIMEN_TYPE,_CreateTypeEditor());
SetReadOnly(ii,EMPTY_LOCI,true);
}
for(i = 0; i < (size_t) COLUMN_COUNT; i++)
{
s = COL_LABELS[i];
SetColLabelValue((int)i,s);
}
SetColLabelAlignment(wxALIGN_LEFT,wxALIGN_CENTRE);
}
}
bool CGridCMF::TransferDataToGrid()
{
size_t n = m_vpSample.size();
bool bRtn = (n > 0);
if(bRtn)
{
// loop through samples
const CLabSettings &lab(m_pFile->GetLabSettings());
wxString sName;
wxString sCat;
COARsample *pSample;
const CLabNameStrings *pNameStr;
size_t i;
for(i = 0; i < n; i++)
{
pSample = m_vpSample.at(i);
// sample name and category
sName = pSample->GetName();
pNameStr = lab.GetLabStrings();
if(pNameStr == NULL)
{
sCat = DEFAULT;
}
else
{
sCat = pNameStr->GetCategory(sName);
if(sCat.IsEmpty())
{
sCat = DEFAULT;
}
}
// now set cell values
SetBoolValue((int)i,EXCLUDE,false);
SetCellValue((int)i,SPECIMEN_TYPE,sCat);
SetCellValue((int)i,SAMPLE,pSample->GetName());
SetTextLength((int)i,SAMPLE,nwxXmlCMFSpecimen::LEN_SPECIMEN_ID);
SetTextLength((int)i,SOURCE_ID,nwxXmlCMFSpecimen::LEN_SOURCE_ID);
SetTextLength((int)i,CASE_ID,nwxXmlCMFSpecimen::LEN_CASE_ID);
SetTextLength((int)i,COMMENT,nwxXmlCMFSpecimen::LEN_SPECIMEN_COMMENT);
}
UpdateEmptyLoci();
nwxGrid::UpdateLabelSizes(this);
AutoSizeColumn(EXCLUDE);
AutoSizeColumn(SAMPLE);
AutoSizeColumn(PARTIAL);
// compute size of SPECIMENT_TYPE columns
int nWidth = wxSystemSettings::GetMetric(wxSYS_VSCROLL_X);
const char *ps = CLabSpecimenCategory::LongestType();
wxClientDC dc(this);
dc.SetFont(GetDefaultCellFont());
wxSize sz = dc.GetTextExtent(ps);
if(!nWidth)
{
nWidth = 20;
}
nWidth += sz.GetWidth();
nWidth += 6;
SetColSize(SPECIMEN_TYPE,nWidth);
sz = dc.GetTextExtent(
"This is sample text to determine the width of the comment column.");
nWidth = sz.GetWidth();
nWidth += 2;
SetColSize(COMMENT,nWidth);
}
return bRtn;
}