int main( int argc, char* argv[] )
{
clock_t t0 = StartTiming();
/* ------------------ */
/* Parse command line */
/* ------------------ */
gArgs.SetCmdLine( argc, argv );
TS.SetLogFile( flog );
if( !ReadScriptParams( scr, gArgs.script, flog ) )
goto exit;
inv_scl = 1.0 / scr.crossscale;
/* ---------------- */
/* Read source data */
/* ---------------- */
if( gArgs.zb >= 0 && gArgs.za < 0 )
gArgs.za = gArgs.zb;
TS.FillFromRgns( gArgs.srcmons, gArgs.idb, gArgs.zb, gArgs.za );
fprintf( flog, "Got %d images.\n", (int)TS.vtil.size() );
if( !TS.vtil.size() )
goto exit;
TS.SetTileDimsFromImageFile();
TS.GetTileDims( gW, gH );
t0 = StopTiming( flog, "ReadFile", t0 );
/* ------------- */
/* Sort by layer */
/* ------------- */
TS.SortAll_z();
/* ----- */
/* Stuff */
/* ----- */
ScapeStuff();
/* ---- */
/* Done */
/* ---- */
exit:
fprintf( flog, "\n" );
VMStats( flog );
fclose( flog );
return 0;
}
int main( int argc, char* argv[] )
{
/* ------------------ */
/* Parse command line */
/* ------------------ */
gArgs.SetCmdLine( argc, argv );
TS.SetLogFile( flog );
/* ---------------- */
/* Read source file */
/* ---------------- */
int isrickfile = !FileIsExt( gArgs.infile, ".xml" );
if( isrickfile )
TS.FillFromRickFile( gArgs.infile, gArgs.zmin, gArgs.zmax );
else
TS.FillFromTrakEM2( gArgs.infile, gArgs.zmin, gArgs.zmax );
fprintf( flog, "Got %d images.\n", (int)TS.vtil.size() );
if( !TS.vtil.size() )
goto exit;
if( isrickfile )
TS.SetTileDimsFromImageFile();
TS.SortAll_z_id();
ismrc = FileIsExt( TS.vtil[0].name.c_str(), ".mrc" );
if( ismrc )
Make_nmrc_paths();
/* ----------- */
/* Diagnostics */
/* ----------- */
if( isrickfile || ismrc ) {
TS.WriteTrakEM2_EZ( "PreClicks.xml",
gArgs.xml_type, gArgs.xml_min, gArgs.xml_max );
}
if( gArgs.clk ) {
TS.ApplyClix( tsClixAffine, gArgs.clk );
TS.WriteTrakEM2_EZ( "PostClicks.xml",
gArgs.xml_type, gArgs.xml_min, gArgs.xml_max );
}
/* ----------------------- */
/* Just make generator xml */
/* ----------------------- */
if( !gArgs.outdir[0] || !strcmp( gArgs.outdir, "NoSuch" ) )
goto exit;
/* --------------- */
/* Create dir tree */
/* --------------- */
CreateTopDir();
WriteImageparamsFile();
CopyCropFile();
CopyLensFile();
if( !gArgs.NoFolds || ismrc ) {
WriteSubfmFile();
WriteReportFile();
}
ForEachLayer();
/* ---- */
/* Done */
/* ---- */
exit:
fprintf( flog, "\n" );
fclose( flog );
return 0;
}
int main( int argc, char* argv[] )
{
clock_t t0 = StartTiming();
/* ------------------ */
/* Parse command line */
/* ------------------ */
gArgs.SetCmdLine( argc, argv );
TS.SetLogFile( flog );
if( !ReadScriptParams( scr, gArgs.script, flog ) )
exit( 42 );
if( scr.blockreqdz < 1 )
scr.blockreqdz == 1;
else if( scr.blockreqdz > scr.blockmaxdz )
scr.blockreqdz = scr.blockmaxdz;
inv_scl = 1.0 / scr.crossscale;
/* --------------- */
/* Read block data */
/* --------------- */
gDat.ReadFile();
if( gArgs.abdbg ) {
if( gArgs.dbgz == -1 )
gArgs.dbgz = gDat.za - 1;
gDat.zmin = gArgs.dbgz;
}
/* ---------------- */
/* Read source data */
/* ---------------- */
string idb;
IDBFromTemp( idb, "../..", flog );
if( idb.empty() )
exit( 42 );
TS.FillFromRgns( gDat.scaf, idb, gDat.zmin, gDat.za );
fprintf( flog, "Got %d images.\n", (int)TS.vtil.size() );
if( !TS.vtil.size() )
goto exit;
TS.SetTileDimsFromImageFile();
TS.GetTileDims( gW, gH );
t0 = StopTiming( flog, "ReadFile", t0 );
/* ------------- */
/* Sort by layer */
/* ------------- */
TS.SortAll_z();
/* ----- */
/* Stuff */
/* ----- */
LayerLoop();
/* ---- */
/* Done */
/* ---- */
exit:
fprintf( flog, "\n" );
VMStats( flog );
fclose( flog );
return 0;
}