void ProbeCalibrationWidget::calibrate()
{
// gnerate the transformation (rotation and translation) matrixes for each image
std::cout<<std::endl;
std::cout << "Calculating Image Data" << std::endl;
std::cout << std::endl;
std::vector<vnl_matrix<double>* > transformationSet(imageStack.size());
Calibration * calibrator = Calibration::New();
calibrator->ClearTransformations();
calibrator->ClearImagePoints();
for (uint i = 0; i < imageStack.size(); i++) {
std::cout<<"Image "<<i+1<<" data"<<std::endl;
vnl_quaternion<double> quaternion(rotations[i][1], rotations[i][2],
rotations[i][3], rotations[i][0]);
vnl_matrix<double> transformation = quaternion.rotation_matrix_transpose();
transformation = transformation.transpose();
calibrator->InsertTransformations(transformation, translations.get_row(i));
calibrator->InsertImagePoints(coords[i]);
}
calibrator->Calibrate();
calibrationParameters = calibrator->getEstimatedUSCalibrationParameters();
}
