// [[Rcpp::export]]
void runit_islocked( Environment env ){
env.assign( "x1", 1 ) ;
env.assign( "x2", 10.0 ) ;
env.assign( "x3", std::string( "foobar" ) ) ;
env.assign( "x4", "foobar" ) ;
std::vector< std::string > aa(2) ; aa[0] = "foo" ; aa[1] = "bar" ;
env.assign( "x5", aa ) ;
}
// [[Rcpp::export]]
Environment huffman_encode(NumericVector probabilities) {
CharacterVector items = probabilities.names();
Environment env = Environment::empty_env().new_child(true);
visitNodes(internal_huffman_encode(probabilities), "", [&items, &env] (Node *n, string s) {
if (n->index >= 0) {
env.assign((const string) items[n->index], s);
}
delete n;
});
return env;
}
// [[Rcpp::export]]
NumericVector evalKernelCpp2(StringMatrix Integrand2,
ExpressionVector Integrand2expr,
Environment myenvd1, Environment myenvd2, LogicalVector CondIntensity,
StringVector NameCountingVar,
StringVector Namecovariates,
LogicalVector ExistdN, LogicalVector ExistdX,
List gridTime, IntegerVector dimCol,
StringVector NameCol, StringVector JumpTimeName){
int FinT = gridTime.size();
int lengtcov= Namecovariates.size();
NumericVector GlobalKernel(FinT);
for(int t=0;t<FinT;t++){
double IntegralKernel = 0;
if(ExistdN[0]){
String ttime = myenvd1.get("t.time");
NumericVector PosInTimedN = gridTime[t];
myenvd1.assign(ttime, PosInTimedN[0]);
}
if(CondIntensity[0]){
StringVector PosListCountingVariableC = myenvd1.get("PosListCountingVariable");
int dimCountingVar = NameCountingVar.size();
for(int i=0;i<dimCountingVar;i++){
String dummyStringListCount = as<std::string>(PosListCountingVariableC[i]);
List DummyListCount = myenvd1.get(dummyStringListCount);
String dummyStringCountN = as<std::string>(NameCountingVar[i]);
myenvd1.assign(dummyStringCountN,DummyListCount[t]);
}
}
if(lengtcov>0){
StringVector PosListCovariatesC = myenvd1.get("PosListCovariates");
for(int h=0;h<lengtcov;h++){
String dummyStringListcovariates = as<std::string>(PosListCovariatesC[h]);
List DummyListcovariates = myenvd1.get(dummyStringListcovariates);
String dummyStringcovariatesN = as<std::string>(Namecovariates[h]);
myenvd1.assign(dummyStringcovariatesN,DummyListcovariates[t]);
}
}
for(int i=0;i<dimCol[0];i++){
if(ExistdN[0]){
StringVector namedJumpTimeX1 = myenvd1.get("namedJumpTimeX");
StringVector namedX1 = myenvd1.get("namedX");
for(int j=0;j<namedJumpTimeX1.size();j++){
if(JumpTimeName[i]==namedJumpTimeX1[j]){
String dummyString = as<std::string>(JumpTimeName[i]);
List JumpTimeDiff = myenvd1.get(dummyString);
String vartime =myenvd1.get("var.time");
myenvd1.assign(vartime,JumpTimeDiff[t]);
String dumdN = NameCol[i];
List dNAll = myenvd1.get(dumdN);
NumericVector dN = dNAll[t];
if(dN.size()==0){
dN[0] = 0;
}
Language eval_call( "eval", Integrand2expr[i], myenvd1);
SEXP X = Rf_eval( eval_call, myenvd1);
NumericVector XX(X);
NumericVector dumY = na_omit(XX);
double dumSumKer = 0;
for(int l=0;l<dumY.size();l++){
dumSumKer = dumSumKer + dumY[l]*dN[l];
}
IntegralKernel = IntegralKernel+dumSumKer;
}
}
}
if(ExistdX[0]){
StringVector namedJumpTimeX2 = myenvd2.get("namedJumpTimeX");
for(int j=0;j<namedJumpTimeX2.size();j++){
if(JumpTimeName[i]==namedJumpTimeX2[j]){
String ttimedX = myenvd2.get("t.time");
NumericVector PosInTimedX = gridTime[t];
myenvd2.assign(ttimedX,PosInTimedX[0]);
String dummyString2 = as<std::string>(JumpTimeName[i]);
NumericVector JumpTime2 = myenvd2.get(dummyString2);
String vartime2 =myenvd2.get("var.time");
IntegerVector idx = seq(0,t);
myenvd2.assign(vartime2,JumpTime2[idx]);
Language eval_call( "eval", Integrand2expr[i], myenvd2);
SEXP X2 = Rf_eval( eval_call, myenvd2);
NumericVector XX2(X2);
String dummyString3 = as<std::string>(NameCol[i]);
NumericVector dXdummy = myenvd2.get(dummyString3);
NumericVector dumY1 = XX2[idx]*dXdummy[idx];
NumericVector dumY2 = na_omit(dumY1);
IntegralKernel = IntegralKernel+sum(dumY2);
}
}
}
}
GlobalKernel[t] = IntegralKernel;
}
return GlobalKernel;
}
// [[Rcpp::export]]
NumericVector evalKernelCpp(StringMatrix Integrand2,
ExpressionVector Integrand2expr,
Environment myenvd1, Environment myenvd2,
LogicalVector ExistdN, LogicalVector ExistdX,
NumericVector gridTime, IntegerVector dimCol,
StringVector NameCol, StringVector JumpTimeName){
int FinT = gridTime.size();
NumericVector GlobalKernel(FinT);
for(int t=0;t<FinT;t++){
if(ExistdN[0]){
String ttime = myenvd1.get("t.time");
myenvd1.assign(ttime, gridTime[t]);
}
if(ExistdX[0]){
String ttimedX = myenvd2.get("t.time");
myenvd2.assign(ttimedX,gridTime[t]);
}
double IntegralKernel = 0;
for(int i=0;i<dimCol[0];i++){
if(ExistdN[0]){
StringVector namedJumpTimeX1 = myenvd1.get("namedJumpTimeX");
StringVector namedX1 = myenvd1.get("namedX");
// printf(namedJumpTimeX1[0]);
for(int j=0;j<namedJumpTimeX1.size();j++){
if(JumpTimeName[i]==namedJumpTimeX1[j]){
String dummyString = as<std::string>(JumpTimeName[i]);
NumericVector JumpTimeDiff = myenvd1.get(dummyString);
String vartime =myenvd1.get("var.time");
myenvd1.assign(vartime,JumpTimeDiff);
}
}
for(int hh=0;hh<NameCol.size();hh++){
if(namedX1[i]==NameCol[hh]){
Language eval_call( "eval", Integrand2expr[hh], myenvd1);
SEXP X = Rf_eval( eval_call, myenvd1);
NumericVector XX(X);
NumericVector dumY = na_omit(XX);
IntegralKernel = IntegralKernel+sum(XX);
}
}
/*
if(any(cond)){
assign(my.envd1$var.time,my.envd1[[my.envd1$namedJumpTimeX[cond]]],envir=my.envd1)
condpos <- my.envd1$namedX %in% NameCol[i]
if(any(condpos)){
IntegralKernelDum<- sum(eval(Integrand2expr[condpos], envir=my.envd1))
IntegralKernel<-IntegralKernel+IntegralKernelDum
}
}
*/
}
if(ExistdX[0]){
StringVector namedJumpTimeX2 = myenvd2.get("namedJumpTimeX");
StringVector namedX2 = myenvd2.get("namedX");
for(int j=0;j<namedJumpTimeX2.size();j++){
if(JumpTimeName[i]==namedJumpTimeX2[j]){
String dummyString2 = as<std::string>(JumpTimeName[i]);
NumericVector JumpTimeDiff2 = myenvd2.get(dummyString2);
String vartime2 =myenvd2.get("var.time");
myenvd2.assign(vartime2,JumpTimeDiff2);
}
}
for(int hh=0;hh<NameCol.size();hh++){
if(namedX2[i]==NameCol[hh]){
Language eval_call( "eval", Integrand2expr[hh], myenvd2);
SEXP X2 = Rf_eval( eval_call, myenvd2);
NumericVector XX2(X2);
NumericVector dumY2 = na_omit(XX2);
IntegralKernel = IntegralKernel+sum(dumY2);
}
}
}
/*
if(ExistdX){
cond <- my.envd2$namedJumpTimeX %in% JumpTimeName[i]
if(any(cond)){
assign(my.envd2$var.time,my.envd2[[my.envd2$namedJumpTimeX[cond]]],envir=my.envd2)
condpos <- my.envd2$namedX %in% NameCol[i]
if(any(condpos)){
IntegralKernelDum<- sum(eval(Integrand2expr[condpos], envir=my.envd2))
IntegralKernel<-IntegralKernel+IntegralKernelDum
}
}
}
*/
}
GlobalKernel[t] = IntegralKernel;
}
return GlobalKernel;
}
// [[Rcpp::export]]
void runit_assign( Environment env, std::string st, SEXP object ){
env.assign(st, object) ;
}