void PeridigmNS::State::copyLocallyOwnedMultiVectorData(Epetra_MultiVector& source, Epetra_MultiVector& target)
{
TEUCHOS_TEST_FOR_EXCEPTION(source.NumVectors() != target.NumVectors(), std::runtime_error,
"PeridigmNS::State::copyLocallyOwnedMultiVectorData() called with incompatible MultiVectors.\n");
int numVectors = target.NumVectors();
const Epetra_BlockMap& sourceMap = source.Map();
const Epetra_BlockMap& targetMap = target.Map();
for(int iVec=0 ; iVec<numVectors ; ++iVec){
Epetra_Vector& sourceVector = *source(iVec);
Epetra_Vector& targetVector = *target(iVec);
for(int targetLID=0 ; targetLID<targetMap.NumMyElements() ; ++targetLID){
int GID = targetMap.GID(targetLID);
int sourceLID = sourceMap.LID(GID);
TEUCHOS_TEST_FOR_EXCEPTION(sourceLID == -1, std::range_error,
"PeridigmNS::State::copyLocallyOwnedMultiVectorData() called with incompatible MultiVectors.\n");
TEUCHOS_TEST_FOR_EXCEPTION(sourceMap.ElementSize(sourceLID) != targetMap.ElementSize(targetLID), std::range_error,
"PeridigmNS::State::copyLocallyOwnedMultiVectorData() called with incompatible MultiVectors.\n");
int elementSize = targetMap.ElementSize(targetLID);
int sourceFirstPointInElement = sourceMap.FirstPointInElement(sourceLID);
int targetFirstPointInElement = targetMap.FirstPointInElement(targetLID);
for(int i=0 ; i<elementSize ; ++i){
targetVector[targetFirstPointInElement+i] = sourceVector[sourceFirstPointInElement+i];
}
}
}
}
void show_matrix(const char *txt, const Epetra_LinearProblem &problem, const Epetra_Comm &comm)
{
int me = comm.MyPID();
if (comm.NumProc() > 10){
if (me == 0){
std::cout << txt << std::endl;
std::cout << "Printed matrix format only works for 10 or fewer processes" << std::endl;
}
return;
}
Epetra_RowMatrix *matrix = problem.GetMatrix();
Epetra_MultiVector *lhs = problem.GetLHS();
Epetra_MultiVector *rhs = problem.GetRHS();
int numRows = matrix->NumGlobalRows();
int numCols = matrix->NumGlobalCols();
if ((numRows > 200) || (numCols > 500)){
if (me == 0){
std::cerr << txt << std::endl;
std::cerr << "show_matrix: problem is too large to display" << std::endl;
}
return;
}
int *myA = new int [numRows * numCols];
make_my_A(*matrix, myA, comm);
int *myX = new int [numCols];
int *myB = new int [numRows];
memset(myX, 0, sizeof(int) * numCols);
memset(myB, 0, sizeof(int) * numRows);
const Epetra_BlockMap &lhsMap = lhs->Map();
const Epetra_BlockMap &rhsMap = rhs->Map();
int base = lhsMap.IndexBase();
for (int j=0; j < lhsMap.NumMyElements(); j++){
int colGID = lhsMap.GID(j);
myX[colGID - base] = me + 1;
}
for (int i=0; i < rhsMap.NumMyElements(); i++){
int rowGID = rhsMap.GID(i);
myB[rowGID - base] = me + 1;
}
printMatrix(txt, myA, myX, myB, numRows, numCols, comm);
delete [] myA;
delete [] myX;
delete [] myB;
}
int MultiVectorToMatlabFile( const char *filename, const Epetra_MultiVector & A) {
std::FILE * handle = 0;
if (A.Map().Comm().MyPID()==0) { // Only PE 0 does this section
handle = fopen(filename,"w");
if (!handle) return(-1);
}
if (MultiVectorToMatlabHandle(handle, A)) return(-1); // Everybody calls this routine
if (A.Map().Comm().MyPID()==0) // Only PE 0 opened a file
if (fclose(handle)) return(-1);
return(0);
}
void EpetraOperatorWrapper::copyThyraIntoEpetra(
const VectorBase<double>& thyraVec, Epetra_MultiVector& x) const
{
using Teuchos::rcpFromRef;
using Teuchos::rcp_dynamic_cast;
const int numVecs = x.NumVectors();
TEUCHOS_TEST_FOR_EXCEPTION(numVecs != 1, std::runtime_error,
"epetraToThyra does not work with MV dimension != 1");
const RCP<const ProductVectorBase<double> > prodThyraVec =
castOrCreateProductVectorBase(rcpFromRef(thyraVec));
const ArrayView<double> epetraData(x[0], x.Map().NumMyElements());
// NOTE: See above!
int offset = 0;
const int numBlocks = prodThyraVec->productSpace()->numBlocks();
for (int b = 0; b < numBlocks; ++b) {
const RCP<const VectorBase<double> > vec_b = prodThyraVec->getVectorBlock(b);
const RCP<const SpmdVectorSpaceBase<double> > spmd_vs_b =
rcp_dynamic_cast<const SpmdVectorSpaceBase<double> >(vec_b->space(), true);
ConstDetachedSpmdVectorView<double> view(vec_b);
const ArrayRCP<const double> thyraData = view.sv().values();
const int localNumElems = spmd_vs_b->localSubDim();
for (int i=0; i < localNumElems; ++i) {
epetraData[i+offset] = thyraData[i];
}
offset += localNumElems;
}
}
int writeMultiVector(FILE * handle, const Epetra_MultiVector & A, bool mmFormat) {
int ierr = 0;
int length = A.GlobalLength();
int numVectors = A.NumVectors();
const Epetra_Comm & comm = A.Map().Comm();
if (comm.MyPID()!=0) {
if (A.MyLength()!=0) ierr = -1;
}
else {
if (length!=A.MyLength()) ierr = -1;
for (int j=0; j<numVectors; j++) {
for (int i=0; i<length; i++) {
double val = A[j][i];
if (mmFormat)
fprintf(handle, "%22.16e\n", val);
else
fprintf(handle, "%22.16e ", val);
}
if (!mmFormat) fprintf(handle, "%s", "\n");
}
}
int ierrGlobal;
comm.MinAll(&ierr, &ierrGlobal, 1); // If any processor has -1, all return -1
return(ierrGlobal);
}
EpetraOpMultiVec::EpetraOpMultiVec(const Teuchos::RCP<Epetra_Operator> &Op,
Epetra_DataAccess CV, const Epetra_MultiVector& P_vec, const std::vector<int>& index)
: Epetra_OP( Op )
{
Epetra_MV = Teuchos::rcp( new Epetra_MultiVector(CV, P_vec, &(const_cast<std::vector<int> &>(index))[0], index.size()) );
Epetra_MV_Temp = Teuchos::rcp( new Epetra_MultiVector( P_vec.Map(), index.size()) );
}
void PhcGeoMGPrec::GetBoundaryBulkResiduals (const Epetra_CrsMatrix & op,
const Epetra_MultiVector & x,
const Epetra_MultiVector & b,
double & bndryRes,
double & bulkRes,
double & totalRes,
int level) const {
Epetra_MultiVector work(x);
op.Apply(x, work);
work.Update(-1., b, 1.);
bndryRes=0.; bulkRes=0.; totalRes=0.;
int numInds = x.Map().getNodeNumElements();
double * vals = work[0];
for (int i=0; i<numInds; i++) {
double val = vals[i];
double afrac = (*dmAreas_[level])[i];
if ((afrac==0.) || (afrac==1.))
bulkRes += val*val;
else {
//std::cout << "afrac: " << afrac << std::endl;
bndryRes += val*val;
}
totalRes += val*val;
}
bulkRes = sqrt(bulkRes);
bndryRes = sqrt(bndryRes);
totalRes = sqrt(totalRes);
}
double BasisAngle( const Epetra_MultiVector& S, const Epetra_MultiVector& T )
{
//
// Computes the largest acute angle between the two orthogonal basis
//
if (S.NumVectors() != T.NumVectors()) {
return acos( 0.0 );
} else {
int lwork, info = 0;
int m = S.NumVectors(), n = T.NumVectors();
int num_vecs = ( m < n ? m : n );
double U[ 1 ], Vt[ 1 ];
lwork = 3*m*n;
std::vector<double> work( lwork );
std::vector<double> theta( num_vecs );
Epetra_LAPACK lapack;
Epetra_LocalMap localMap( S.NumVectors(), 0, S.Map().Comm() );
Epetra_MultiVector Pvec( localMap, T.NumVectors() );
info = Pvec.Multiply( 'T', 'N', 1.0, S, T, 0.0 );
//
// Perform SVD on S^T*T
//
lapack.GESVD( 'N', 'N', num_vecs, num_vecs, Pvec.Values(), Pvec.Stride(),
&theta[0], U, 1, Vt, 1, &work[0], &lwork, &info );
assert( info == 0 );
return (acos( theta[num_vecs-1] ) );
}
//
// Default return statement, should never be executed.
//
return acos( 0.0 );
}
//==============================================================================
// This preconditioner can be much slower than AztecOO and ML versions
// if the matrix-vector product requires all ExtractMyRowCopy()
// (as done through Ifpack_AdditiveSchwarz).
int Ifpack_PointRelaxation::
ApplyInverseJacobi(const Epetra_MultiVector& RHS, Epetra_MultiVector& LHS) const
{
int NumVectors = LHS.NumVectors();
Epetra_MultiVector A_times_LHS( LHS.Map(),NumVectors );
for (int j = 0; j < NumSweeps_ ; j++) {
IFPACK_CHK_ERR(Apply(LHS,A_times_LHS));
IFPACK_CHK_ERR(A_times_LHS.Update(1.0,RHS,-1.0));
for (int v = 0 ; v < NumVectors ; ++v)
IFPACK_CHK_ERR(LHS(v)->Multiply(DampingFactor_, *(A_times_LHS(v)),
*Diagonal_, 1.0));
}
// Flops:
// - matrix vector (2 * NumGlobalNonzeros_)
// - update (2 * NumGlobalRows_)
// - Multiply:
// - DampingFactor (NumGlobalRows_)
// - Diagonal (NumGlobalRows_)
// - A + B (NumGlobalRows_)
// - 1.0 (NumGlobalRows_)
ApplyInverseFlops_ += NumVectors * (6 * NumGlobalRows_ + 2 * NumGlobalNonzeros_);
return(0);
}
// ================================================ ====== ==== ==== == =
//! Implicitly applies in the inverse in an 1-2-1 format
int ML_Epetra::RefMaxwellPreconditioner::ApplyInverse_Implicit_121(const Epetra_MultiVector& B, Epetra_MultiVector& X) const
{
#ifdef ML_TIMING
double t_time,t_diff;
StartTimer(&t_time);
#endif
int NumVectors=B.NumVectors();
Epetra_MultiVector TempE1(X.Map(),NumVectors,false);
Epetra_MultiVector TempE2(X.Map(),NumVectors,true);
Epetra_MultiVector TempN1(*NodeMap_,NumVectors,false);
Epetra_MultiVector TempN2(*NodeMap_,NumVectors,true);
Epetra_MultiVector Resid(B);
/* Pre-Smoothing */
ML_CHK_ERR(PreEdgeSmoother->ApplyInverse(B,X));
/* Precondition (1,1) Block */
ML_CHK_ERR(EdgePC->ApplyInverse(Resid,TempE2));
ML_CHK_ERR(X.Update(1.0,TempE2,1.0));;
/* Build Residual */
ML_CHK_ERR(SM_Matrix_->Multiply(false,X,TempE1));
ML_CHK_ERR(Resid.Update(-1.0,TempE1,1.0,B,0.0));
if(!HasOnlyDirichletNodes){
ML_CHK_ERR(D0_Matrix_->Multiply(true,Resid,TempN1));
}
/* Precondition (2,2) Block */
if(!HasOnlyDirichletNodes){
ML_CHK_ERR(NodePC->ApplyInverse(TempN1,TempN2));
D0_Matrix_->Multiply(false,TempN2,TempE1);
}/*end if*/
if(!HasOnlyDirichletNodes) X.Update(1.0,TempE1,1.0);
/* Build Residual */
ML_CHK_ERR(SM_Matrix_->Multiply(false,X,TempE1));
ML_CHK_ERR(Resid.Update(-1.0,TempE1,1.0,B,0.0));
/* Precondition (1,1) Block */
TempE2.PutScalar(0.0);
ML_CHK_ERR(EdgePC->ApplyInverse(Resid,TempE2));
ML_CHK_ERR(X.Update(1.0,TempE2,1.0));;
/* Post-Smoothing */
ML_CHK_ERR(PostEdgeSmoother->ApplyInverse(B,X));
#ifdef ML_TIMING
StopTimer(&t_time,&t_diff);
/* Output */
ML_Comm *comm_;
ML_Comm_Create(&comm_);
this->ApplicationTime_+= t_diff;
ML_Comm_Destroy(&comm_);
#endif
return 0;
}
int EpetraSamplingOperator::Apply(const Epetra_MultiVector &X, Epetra_MultiVector &Y) const
{
TEUCHOS_ASSERT(map_.PointSameAs(X.Map()) && map_.PointSameAs(Y.Map()));
TEUCHOS_ASSERT(X.NumVectors() == Y.NumVectors());
Y.PutScalar(0.0);
for (int iVec = 0; iVec < X.NumVectors(); ++iVec) {
const ArrayView<const double> sourceVec(X[iVec], X.MyLength());
const ArrayView<double> targetVec(Y[iVec], Y.MyLength());
for (Array<GlobalIndex>::const_iterator it = sampleLIDs_.begin(), it_end = sampleLIDs_.end(); it != it_end; ++it) {
targetVec[*it] = sourceVec[*it];
}
}
return 0;
}
int
AmesosGenOp::Apply (const Epetra_MultiVector& X, Epetra_MultiVector& Y) const
{
if (problem_ == NULL) {
throw std::logic_error ("AmesosGenOp::Apply: problem_ is NULL");
}
if (massMtx_.is_null ()) {
throw std::logic_error ("AmesosGenOp::Apply: massMtx_ is null");
}
if (solver_.is_null ()) {
throw std::logic_error ("AmesosGenOp::Apply: solver_ is null");
}
if (! useTranspose_) {
// Storage for M*X
Epetra_MultiVector MX (X.Map (), X.NumVectors ());
// Apply M*X
massMtx_->Apply (X, MX);
Y.PutScalar (0.0);
// Set the LHS and RHS
problem_->SetRHS (&MX);
problem_->SetLHS (&Y);
// Solve the linear system A*Y = MX
solver_->Solve ();
}
else { // apply the transposed operator
// Storage for A^{-T}*X
Epetra_MultiVector ATX (X.Map (), X.NumVectors ());
Epetra_MultiVector tmpX = const_cast<Epetra_MultiVector&> (X);
// Set the LHS and RHS
problem_->SetRHS (&tmpX);
problem_->SetLHS (&ATX);
// Solve the linear system A^T*Y = X
solver_->Solve ();
// Apply M*ATX
massMtx_->Apply (ATX, Y);
}
return 0; // the method completed correctly
}
//==============================================================================
int Ifpack_ReorderFilter::
Multiply(bool TransA, const Epetra_MultiVector& X,
Epetra_MultiVector& Y) const
{
// need two additional vectors
Epetra_MultiVector Xtilde(X.Map(),X.NumVectors());
Epetra_MultiVector Ytilde(Y.Map(),Y.NumVectors());
// bring X back to original ordering
Reordering_->Pinv(X,Xtilde);
// apply original matrix
IFPACK_CHK_ERR(Matrix()->Multiply(TransA,Xtilde,Ytilde));
// now reorder result
Reordering_->P(Ytilde,Y);
return(0);
}
void
Albany::STKDiscretization::getSolutionFieldHistory(Epetra_MultiVector &result) const
{
TEUCHOS_TEST_FOR_EXCEPT(!this->map->SameAs(result.Map()));
const int stepCount = std::min(this->getSolutionFieldHistoryDepth(), result.NumVectors());
Epetra_MultiVector head(View, result, 0, stepCount);
this->getSolutionFieldHistoryImpl(head);
}
//==============================================================================
int Komplex_LinearProblem::TestMaps (const Epetra_RowMatrix & A0, const Epetra_RowMatrix & A1,
const Epetra_MultiVector & Xr, const Epetra_MultiVector & Xi,
const Epetra_MultiVector & Br, const Epetra_MultiVector & Bi){
TEUCHOS_TEST_FOR_EXCEPT(!A0.RowMatrixRowMap().SameAs(A1.RowMatrixRowMap()));
TEUCHOS_TEST_FOR_EXCEPT(!A0.OperatorDomainMap().SameAs(A1.OperatorDomainMap()));
TEUCHOS_TEST_FOR_EXCEPT(!A0.OperatorRangeMap().SameAs(A1.OperatorRangeMap()));
TEUCHOS_TEST_FOR_EXCEPT(!A0.OperatorDomainMap().SameAs(Xr.Map()));
TEUCHOS_TEST_FOR_EXCEPT(!A0.OperatorRangeMap().SameAs(Br.Map()));
TEUCHOS_TEST_FOR_EXCEPT(!A0.OperatorDomainMap().SameAs(Xi.Map()));
TEUCHOS_TEST_FOR_EXCEPT(!A0.OperatorRangeMap().SameAs(Bi.Map()));
// Test number of vectors also
TEUCHOS_TEST_FOR_EXCEPT(Xr.NumVectors()!=Xi.NumVectors());
TEUCHOS_TEST_FOR_EXCEPT(Xr.NumVectors()!=Br.NumVectors());
TEUCHOS_TEST_FOR_EXCEPT(Xr.NumVectors()!=Bi.NumVectors());
return(0);
}
// ================================================ ====== ==== ==== == =
// Apply the preconditioner to an Epetra_MultiVector X, puts the result in Y
int ML_Epetra::RefMaxwellPreconditioner::ApplyInverse(const Epetra_MultiVector& B, Epetra_MultiVector& X_) const
{
int rv;
/* Sanity Checks */
if (!B.Map().SameAs(*DomainMap_)) ML_CHK_ERR(-1);
if (B.NumVectors() != X_.NumVectors()) ML_CHK_ERR(-1);
/* Check for zero RHS */
bool norm0=true;
double *norm=new double[B.NumVectors()];
B.Norm2(norm);
for(int i=0;norm0==true && i<B.NumVectors();i++) norm0=norm0 && (norm[i]==0);
delete [] norm;
if(norm0) return 0;
/* Build new work vector X */
Epetra_MultiVector X(X_.Map(),X_.NumVectors());
X.PutScalar(0);
/* What mode to run in? */
if(mode=="212") rv=ApplyInverse_Implicit_212(B,X);
else if(mode=="additive") rv=ApplyInverse_Implicit_Additive(B,X);
else if(mode=="121") rv=ApplyInverse_Implicit_121(B,X);
else {fprintf(stderr,"%s","RefMaxwellPreconditioner ERROR: Invalid ApplyInverse mode set in Teuchos list");ML_CHK_ERR(-2);}
ML_CHK_ERR(rv);
/* Copy work vector to output */
X_=X;
/* Timer Stuff */
#ifdef ML_TIMING
ML_Epetra::RefMaxwellPreconditioner* This = const_cast<ML_Epetra::RefMaxwellPreconditioner *>(this);
if(FirstApplication_){
This->FirstApplication_=false;
This->FirstApplicationTime_=ApplicationTime_;
}/*end if*/
This->NumApplications_++;
#endif
return 0;
}/*end ApplyInverse*/
// Apply the preconditioner w/ RHS B and get result X
int ML_Epetra::LevelWrap::ApplyInverse(const Epetra_MultiVector& B, Epetra_MultiVector& X_) const{
#ifdef ML_TIMING
double t_time,t_diff;
StartTimer(&t_time);
#endif
// Sanity Checks
if (!B.Map().SameAs(OperatorDomainMap())) return -1;
if (!X_.Map().SameAs(OperatorRangeMap())) return -1;
if (!X_.Map().SameAs(B.Map())) return -1;
if (B.NumVectors() != X_.NumVectors()) return -1;
// Build new work vector X
Epetra_MultiVector X(X_.Map(),X_.NumVectors(),true);
Epetra_MultiVector tmp0(X_.Map(),X_.NumVectors(),true);
Epetra_MultiVector tmp1(P0_->DomainMap(),X_.NumVectors(),true);
Epetra_MultiVector tmp2(P0_->DomainMap(),X_.NumVectors(),true);
// Pre Smoother
if(pre_or_post==ML_BOTH || pre_or_post==ML_PRESMOOTHER){
Smoother_->ApplyInverse(B,X);
}
// Form coarse residual
A0_->Apply(X,tmp0);
tmp0.Update(1.0,B,-1.0);
if(use_pt_) P0_->Multiply(true,tmp0,tmp1);
else R0_->Multiply(false,tmp0,tmp1);
// Solve coarse problem
A1prec_->ApplyInverse(tmp1,tmp2);
// Update solution
P0_->Multiply(false,tmp2,tmp0);
X.Update(1.0,tmp0,1.0);
// Post Smoother
if(pre_or_post==ML_BOTH || pre_or_post==ML_PRESMOOTHER){
Smoother_->ApplyInverse(B,X);
}
// Copy to output
X_=X;
#ifdef ML_TIMING
StopTimer(&t_time,&t_diff);
/* Output */
ML_Comm *comm_;
ML_Comm_Create(&comm_);
ApplicationTime_+= t_diff;
if(FirstApplication_){
FirstApplication_=false;
FirstApplicationTime_=ApplicationTime_;
}/*end if*/
ML_Comm_Destroy(&comm_);
#endif
return 0;
}
void
LOCA::Epetra::CompactWYOp::init(const Epetra_MultiVector& x)
{
if (tmpMat1 != NULL)
delete tmpMat1;
if (tmpMV != NULL)
delete tmpMV;
tmpMat1 = NULL;
tmpMV = NULL;
tmpMat1 = new Epetra_MultiVector(localMap, 1, false);
tmpMV = new Epetra_MultiVector(x.Map(), 1, false);
}
int MultiVectorToMatrixMarketFile( const char *filename, const Epetra_MultiVector & A,
const char * matrixName,
const char *matrixDescription,
bool writeHeader) {
int M = A.GlobalLength();
int N = A.NumVectors();
FILE * handle = 0;
if (A.Map().Comm().MyPID()==0) { // Only PE 0 does this section
handle = fopen(filename,"w");
if (!handle) return(-1);
MM_typecode matcode;
mm_initialize_typecode(&matcode);
mm_set_matrix(&matcode);
mm_set_array(&matcode);
mm_set_real(&matcode);
if (writeHeader==true) { // Only write header if requested (true by default)
if (mm_write_banner(handle, matcode)) return(-1);
if (matrixName!=0) fprintf(handle, "%% \n%% %s\n", matrixName);
if (matrixDescription!=0) fprintf(handle, "%% %s\n%% \n", matrixDescription);
if (mm_write_mtx_array_size(handle, M, N)) return(-1);
}
}
if (MultiVectorToMatrixMarketHandle(handle, A)) return(-1); // Everybody calls this routine
if (A.Map().Comm().MyPID()==0) // Only PE 0 opened a file
if (fclose(handle)) return(-1);
return(0);
}
//-----------------------------------------------------------------------------
// Function : N_LAS_AmesosGenOp::Apply()
// Purpose : Applies the operator inv(A)*B*X = Y
// Special Notes :
// Scope : Public
// Creator : Heidi Thornquist, SNL
// Creation Date : 06/04/12
//-----------------------------------------------------------------------------
int N_LAS_AmesosGenOp::Apply(const Epetra_MultiVector& X, Epetra_MultiVector& Y ) const
{
if (!useTranspose_) {
// Storage for B*X
Epetra_MultiVector BX(X.Map(),X.NumVectors());
// Apply B*X
B_->Apply(X, BX);
Y.PutScalar(0.0);
// Set the LHS and RHS
problem_->SetRHS(&BX);
problem_->SetLHS(&Y);
// Solve the linear system A*Y = BX
solver_->Solve();
}
else {
// Storage for A^{-T}*X
Epetra_MultiVector ATX(X.Map(),X.NumVectors());
Epetra_MultiVector tmpX = const_cast<Epetra_MultiVector&>(X);
// Set the LHS and RHS
problem_->SetRHS(&tmpX);
problem_->SetLHS(&ATX);
// Solve the linear system A^T*Y = X
solver_->Solve();
// Apply B*ATX
B_->Apply(ATX, Y);
}
return 0;
}
//EpetraMultiVector_To_TpetraMultiVector: copies Epetra_MultiVector to non-const Tpetra_MultiVector
Teuchos::RCP<Tpetra_MultiVector> Petra::EpetraMultiVector_To_TpetraMultiVector(const Epetra_MultiVector& epetraMV_,
const Teuchos::RCP<const Teuchos::Comm<int> >& commT_)
{
//get map from epetraMV_ and convert to Tpetra::Map
auto mapT = EpetraMap_To_TpetraMap(epetraMV_.Map(), commT_);
//copy values from epetraMV_
int numVectors = epetraMV_.NumVectors();
int Length;
ST *values;
epetraMV_.ExtractView(&values, &Length);
Teuchos::ArrayView<ST> valuesAV = Teuchos::arrayView(values, Length*numVectors);
//create Tpetra_MultiVector copy of epetraMV_
Teuchos::RCP<Tpetra_MultiVector> tpetraMV_ = Teuchos::rcp(new Tpetra_MultiVector(mapT, valuesAV, Length, numVectors));
return tpetraMV_;
}
// =============================================================================
Epetra_NumPyMultiVector::Epetra_NumPyMultiVector(const Epetra_MultiVector & source):
Epetra_MultiVector(source)
{
map = new Epetra_BlockMap(source.Map());
npy_intp dims[ ] = { NumVectors(), map->NumMyPoints() };
double **v = NULL;
Epetra_MultiVector::ExtractView(&v);
array = (PyArrayObject *) PyArray_SimpleNewFromData(2,dims,NPY_DOUBLE,
(void *)v[0]);
if (!array)
{
cleanup();
throw PythonException();
}
}
int checkMultiVectors( Epetra_MultiVector & X, Epetra_MultiVector & Y, string message = "", bool verbose = false) {
int numVectors = X.NumVectors();
int length = Y.MyLength();
int badvalue = 0;
int globalbadvalue = 0;
for (int j=0; j<numVectors; j++)
for (int i=0; i< length; i++)
if (checkValues(X[j][i], Y[j][i])==1) badvalue = 1;
X.Map().Comm().MaxAll(&badvalue, &globalbadvalue, 1);
if (verbose) {
if (globalbadvalue==0) cout << message << " check OK." << endl;
else cout << "********* " << message << " check failed.********** " << endl;
}
return(globalbadvalue);
}
int AmesosBucklingOp::Apply(const Epetra_MultiVector& X, Epetra_MultiVector& Y ) const
{
// Storage for A*X
Epetra_MultiVector AX(X.Map(),X.NumVectors());
// Apply A*X
stiffMtx_->Apply(X, AX);
Y.PutScalar(0.0);
// Set the LHS and RHS
problem_->SetRHS(&AX);
problem_->SetLHS(&Y);
// Solve the linear system (A-sigma*M)*Y = AX
solver_->Solve();
return 0;
}
// Convert a Thyra::MultiVectorBase object to a Epetra_MultiVector object with
// the map defined by the Epetra_Map.
// const Teuchos::RCP<const Epetra_MultiVector>
// blockThyraToEpetra(const Teuchos::RCP<const Thyra::MultiVectorBase<double> > & tX,const RCP<const Epetra_Map> & map)
void blockThyraToEpetra(const Teuchos::RCP<const Thyra::MultiVectorBase<double> > & thyraX,Epetra_MultiVector & epetraX)
{
// build an Epetra_MultiVector object
int numVectors = thyraX->domain()->dim();
// make sure the number of vectors are the same
TEUCHOS_ASSERT(numVectors==epetraX.NumVectors());
TEUCHOS_ASSERT(thyraX->range()->dim()==epetraX.GlobalLength());
// extract local information from the Epetra_MultiVector
int leadingDim=0,localDim=0;
double * epetraData=0;
epetraX.ExtractView(&epetraData,&leadingDim);
// perform recursive copy
blockThyraToEpetra(numVectors,epetraData,leadingDim,thyraX,localDim);
// sanity check
TEUCHOS_ASSERT(localDim==epetraX.Map().NumMyElements());
}
int DoCopyMultiVector(double** matlabApr, const Epetra_MultiVector& A) {
int ierr = 0;
int length = A.GlobalLength();
int numVectors = A.NumVectors();
const Epetra_Comm & comm = A.Map().Comm();
if (comm.MyPID()!=0) {
if (A.MyLength()!=0) ierr = -1;
}
else {
if (length!=A.MyLength()) ierr = -1;
double* matlabAvalues = *matlabApr;
double* Aptr = A.Values();
memcpy((void *)matlabAvalues, (void *)Aptr, sizeof(*Aptr) * length * numVectors);
*matlabApr += length;
}
int ierrGlobal;
comm.MinAll(&ierr, &ierrGlobal, 1); // If any processor has -1, all return -1
return(ierrGlobal);
}
// =============================================================================
Epetra_NumPyVector::Epetra_NumPyVector(Epetra_DataAccess CV,
const Epetra_MultiVector & source,
int index):
Epetra_Vector(CV,source,index)
{
// Store the Epetra_MultiVector's map
map = new Epetra_BlockMap(source.Map());
// Wrap the Epetra_MultiVector
npy_intp dims[ ] = { map->NumMyElements() };
double *v = NULL;
Epetra_Vector::ExtractView(&v);
array = (PyArrayObject *)
PyArray_SimpleNewFromData(1,dims,PyArray_DOUBLE,(void *)v);
if (!array)
{
cleanup();
throw PythonException();
}
}
int
Stokhos::ProductEpetraOperator::
Apply(const Epetra_MultiVector& Input, Epetra_MultiVector& Result) const
{
if (useTranspose) {
EpetraExt::BlockMultiVector sg_input(View, *range_base_map, Input);
Epetra_MultiVector tmp(Result.Map(), Result.NumVectors());
Result.PutScalar(0.0);
for (int i=0; i<coeff_.size(); i++) {
coeff_[i]->Apply(*(sg_input.GetBlock(i)), tmp);
Result.Update(1.0, tmp, 1.0);
}
}
else {
EpetraExt::BlockMultiVector sg_result(View, *range_base_map, Result);
for (int i=0; i<coeff_.size(); i++)
coeff_[i]->Apply(Input, *(sg_result.GetBlock(i)));
}
return 0;
}
//==============================================================================
// This preconditioner can be much slower than AztecOO and ML versions
// if the matrix-vector product requires all ExtractMyRowCopy()
// (as done through Ifpack_AdditiveSchwarz).
int Ifpack_PointRelaxation::
ApplyInverseJacobi(const Epetra_MultiVector& RHS, Epetra_MultiVector& LHS) const
{
int NumVectors = LHS.NumVectors();
int startIter = 0;
if (NumSweeps_ > 0 && ZeroStartingSolution_) {
// When we have a zero initial guess, we can skip the first
// matrix apply call and zero initialization
for (int v = 0; v < NumVectors; v++)
IFPACK_CHK_ERR(LHS(v)->Multiply(DampingFactor_, *(RHS(v)), *Diagonal_, 0.0));
startIter = 1;
}
bool zeroOut = false;
Epetra_MultiVector A_times_LHS(LHS.Map(), NumVectors, zeroOut);
for (int j = startIter; j < NumSweeps_ ; j++) {
IFPACK_CHK_ERR(Apply(LHS, A_times_LHS));
IFPACK_CHK_ERR(A_times_LHS.Update(1.0,RHS,-1.0));
for (int v = 0 ; v < NumVectors ; ++v)
IFPACK_CHK_ERR(LHS(v)->Multiply(DampingFactor_, *(A_times_LHS(v)),
*Diagonal_, 1.0));
}
// Flops:
// - matrix vector (2 * NumGlobalNonzeros_)
// - update (2 * NumGlobalRows_)
// - Multiply:
// - DampingFactor (NumGlobalRows_)
// - Diagonal (NumGlobalRows_)
// - A + B (NumGlobalRows_)
// - 1.0 (NumGlobalRows_)
#ifdef IFPACK_FLOPCOUNTERS
ApplyInverseFlops_ += NumVectors * (6 * NumGlobalRows_ + 2 * NumGlobalNonzeros_);
#endif
return(0);
}
// =============================================================================
Epetra_NumPyMultiVector::Epetra_NumPyMultiVector(Epetra_DataAccess CV,
const Epetra_MultiVector & source,
PyObject * range):
Epetra_MultiVector(CV, source, getRange(range, source), getRangeLen(range, source))
{
// Store the local map
map = new Epetra_BlockMap(source.Map());
// Wrap the Epetra_MultiVector
npy_intp dims[ ] = { NumVectors(), MyLength() };
double **v = NULL;
Epetra_MultiVector::ExtractView(&v);
array = (PyArrayObject *) PyArray_SimpleNewFromData(2,dims,NPY_DOUBLE,
(void *)v[0]);
if (!array)
{
cleanup();
throw PythonException();
}
// We're done with the tmp_range array
Py_XDECREF(tmp_range);
tmp_range = NULL;
}