static void makeGraph(GraphType &graph, double** input, int matrix_size) {
std::vector<SGNode> nodes;
nodes.resize(matrix_size);
for(int i = 0; i<matrix_size; i++){
Node n;
n.id = i;
SGNode node = graph.createNode(n);
graph.addNode(node);
nodes[i] = node;
}
int numEdges = 0;
for(int i = 0; i<matrix_size; i++){
SGNode src = nodes[i];
for(int j = i; j<matrix_size; j++){
if(input[i][j] != 0){
typename GraphType::edge_iterator it = graph.addEdge(src, nodes[j], Galois::MethodFlag::NONE);
graph.getEdgeData(it) = input[i][j];
numEdges++;
}
}
}
//#if BORUVKA_DEBUG
std::cout << "Final num edges " << numEdges << std::endl;
//#endif
}
Totals
sage_time_add_edge()
{
// Insert vertices
GraphType *g = new GraphType;
start_deadman(2);
while (!had_alarm && g->numberOfGraphNodes()<MAX_VERTICES)
g->addNode(new SgGraphNode);
// Build a list of vertices that we can index in constant time.
std::vector<SgGraphNode*> vertices = sage_vertex_vector(g);
// The actual test
start_deadman(2);
Sawyer::Stopwatch t;
while (!had_alarm && g->numberOfGraphEdges()<MAX_EDGES) {
SgGraphNode *v1 = sage_random_vertex(g, vertices);
SgGraphNode *v2 = sage_random_vertex(g, vertices);
g->addEdge(v1, v2);
}
t.stop();
return report("add edge", sage_size(g), g->numberOfGraphEdges(), t, "edges/s");
}
static void makeGraph(GraphType &graph, const char* input) {
std::vector<SGNode> nodes;
//Create local computation graph.
typedef Galois::Graph::LC_CSR_Graph<Node, edgedata> InGraph;
typedef InGraph::GraphNode InGNode;
InGraph in_graph;
//Read graph from file.
Galois::Graph::readGraph(in_graph, input);
std::cout << "Read " << in_graph.size() << " nodes\n";
//A node and a int is an element.
typedef std::pair<InGNode, edgedata> Element;
//A vector of element is 'Elements'
typedef std::vector<Element> Elements;
//A vector of 'Elements' is a 'Map'
typedef std::vector<Elements> Map;
//'in_edges' is a vector of vector of pairs of nodes and int.
Map edges(in_graph.size());
//
int numEdges = 0;
// Extract edges from input graph
for (InGraph::iterator src = in_graph.begin(), esrc = in_graph.end();
src != esrc; ++src) {
for (InGraph::edge_iterator
dst = in_graph.edge_begin(*src, Galois::MethodFlag::NONE),
edst = in_graph.edge_end(*src, Galois::MethodFlag::NONE);
dst != edst; ++dst) {
edgedata w = in_graph.getEdgeData(dst);
Element e(*src, w);
edges[in_graph.getEdgeDst(dst)].push_back(e);
numEdges++;
}
}
//#if BORUVKA_DEBUG
std::cout<<"Number of edges "<<numEdges<<std::endl;
//#endif
// Create nodes in output graph
nodes.resize(in_graph.size());
int nodeID = 0;
for (Map::iterator i = edges.begin(), ei = edges.end(); i != ei; ++i) {
Node n;
n.id = nodeID;
assert(!n.seen);
SGNode node = graph.createNode(n);
graph.addNode(node);
nodes[nodeID] = node;
nodeID++;
}
int id = 0;
numEdges = 0;
for (Map::iterator i = edges.begin(), ei = edges.end(); i != ei; ++i) {
SGNode src = nodes[id];
for (Elements::iterator j = i->begin(), ej = i->end(); j != ej; ++j) {
typename GraphType::edge_iterator
it = graph.findEdge(src, nodes[j->first], Galois::MethodFlag::NONE);
if ( it != graph.edge_end(src, Galois::MethodFlag::NONE) ) {
assert(graph.getEdgeData(it) == j->second);
continue;
}
it = graph.addEdge(src, nodes[j->first], Galois::MethodFlag::NONE);
graph.getEdgeData(it) = j->second;
numEdges++;
}
id++;
}
//#if BORUVKA_DEBUG
std::cout << "Final num edges " << numEdges << std::endl;
//#endif
}