int processFilepath(
const char * filename, // name of the file to be read
std::ostream * os, // output stream to use (NULL for no output). Not that cerr is used to report errors.
MultiFormatReader::DataFormatType fmt, // enum indicating the file format to expect.
INIReader & iniReader) {
assert(filename);
int rc;
try {
MultiFormatReader * nexusReader;
nexusReader = instantiateReader();
if (!gQuietMode) {
cerr << "Executing" << endl;
}
try {
nexusReader->DemoteBlocks();
nexusReader->ReadFilepath(filename, fmt);
rc = processContent(*nexusReader, filename, os, iniReader);
} catch(...) {
nexusReader->DeleteBlocksFromFactories();
delete nexusReader;
throw;
}
nexusReader->DeleteBlocksFromFactories();
delete nexusReader;
return rc;
} catch (const NxsException &x) {
cerr << "Error:\n " << x.msg << endl;
if (x.line > 0 || x.pos > 0) {
cerr << "at line " << x.line << ", column (approximately) " << x.col << " (and file position "<< x.pos << ")" << endl;
}
return 2;
}
}
int processFilepath(
const char * filename, // name of the file to be read
ostream * , // output stream to use (NULL for no output). Not that cerr is used to report errors.
MultiFormatReader::DataFormatType fmt, // enum indicating the file format to expect.
ProcessActionsEnum ) // enum that is passed on to processContent to indicate what should be done with the content of the file.
#endif
{
assert(filename);
try
{
MultiFormatReader * nexusReader;
# if defined(MULTIFILE_NEXUS_READER) && MULTIFILE_NEXUS_READER
nexusReader = gNexusReader;
# else
nexusReader = instantiateReader();
# endif
if (!gQuietMode)
cerr << "Executing" << endl;
try {
nexusReader->DemoteBlocks();
nexusReader->ReadFilepath(filename, fmt);
# if !defined(MULTIFILE_NEXUS_READER) || !MULTIFILE_NEXUS_READER
processContent(*nexusReader, os, currentAction);
# endif
}
catch(...) {
nexusReader->DeleteBlocksFromFactories();
# if ! defined(MULTIFILE_NEXUS_READER) || !MULTIFILE_NEXUS_READER
delete nexusReader;
# endif
throw;
}
# if !defined(MULTIFILE_NEXUS_READER) || !MULTIFILE_NEXUS_READER
nexusReader->DeleteBlocksFromFactories();
delete nexusReader;
# endif
return 0;
}
catch (const NxsException &x)
{
cerr << "Error:\n " << x.msg << endl;
if (x.line > 0 || x.pos > 0)
cerr << "at line " << x.line << ", column (approximately) " << x.col << " (and file position "<< x.pos << ")" << endl;
return 2;
}
}
