/**
* Once name/sequence/qualities have been parsed for a
* paired-end read, set all the other key fields of the Read
* structs.
*/
void PatternSourcePerThread::finalizePair(Read& ra, Read& rb) {
ra.mate = 1;
ra.constructRevComps();
ra.constructReverses();
ra.fixMateName(1);
ra.seed = genRandSeed(ra.patFw, ra.qual, ra.name, seed_);
rb.mate = 2;
rb.constructRevComps();
rb.constructReverses();
rb.fixMateName(2);
rb.seed = genRandSeed(rb.patFw, rb.qual, rb.name, seed_);
}
/**
* Once name/sequence/qualities have been parsed for an
* unpaired read, set all the other key fields of the Read
* struct.
*/
void PatternSourcePerThread::finalize(Read& ra) {
ra.mate = 0;
ra.constructRevComps();
ra.constructReverses();
ra.seed = genRandSeed(ra.patFw, ra.qual, ra.name, seed_);
}
