/** @cond doxygenLibsbmlInternal */
void
LayoutModelPlugin::writeAttributes (XMLOutputStream& ) const
{
//
// This function is used only for SBML Level 2.
//
if ( getURI() != LayoutExtension::getXmlnsL2() ) return;
SBase *parent = const_cast<SBase*>(getParentSBMLObject());
if (parent == NULL)
return;
// when called this will serialize the annotation
parent->getAnnotation();
}
/** @cond doxygenLibsbmlInternal */
void
RenderListOfLayoutsPlugin::writeAttributes (XMLOutputStream& stream) const
{
//
// This function is used only for SBML Level 2.
//
if ( getURI() != RenderExtension::getXmlnsL2() ) return;
SBase *parent = const_cast<SBase*>(getParentSBMLObject());
if (!parent) return;
// getting the annotation actually updates all annotations
// so the call is needed
/*XMLNode *annotation =*/ parent->getAnnotation();
//RenderListOfLayoutsPlugin* self = const_cast<RenderListOfLayoutsPlugin*>(this);
//self->syncAnnotation(parent, parent->getAnnotation());
}
bool UniPAX::SBase::merge(SBase& object)
{
if (metaId.empty())
{
metaId = object.getMetaId();
}
else
{
if (metaId.compare(object.getMetaId()) != 0)
{
std::cerr << "Error during merging: UniPAX::SBase::metaId not equal ..."
<< metaId << " != " << object.getMetaId() << std::endl;
return false;
}
}
if (sboTerm.empty())
{
sboTerm = object.getSboTerm();
}
else
{
if (sboTerm.compare(object.getSboTerm()) != 0)
{
std::cerr << "Error during merging: UniPAX::SBase::sboTerm not equal ..."
<< sboTerm << " != " << object.getSboTerm() << std::endl;
return false;
}
}
if (notes.empty())
{
notes = object.getNotes();
}
else
{
if (notes.compare(object.getNotes()) != 0)
{
std::cerr << "Error during merging: UniPAX::SBase::notes not equal ..."
<< notes << " != " << object.getNotes() << std::endl;
return false;
}
}
if (annotation.empty())
{
annotation = object.getAnnotation();
}
else
{
if (annotation.compare(object.getAnnotation()) != 0)
{
std::cerr << "Error during merging: UniPAX::SBase::annotation not equal ..."
<< annotation << " != " << object.getAnnotation() << std::endl;
return false;
}
}
// if (unipaxSource != 0)
// {
// if (object.getUnipaxSource() != 0)
// {
//
// if (unipaxSource->getUnipaxId() != object.getUnipaxSource()->getUnipaxId())
// {
// std::cerr << "Error during merging: UniPAX::SBase::unipaxSource not equal ..."
// << unipaxSource->getUnipaxId() << " != " << object.getUnipaxSource()->getUnipaxId() << std::endl;
// return false;
// }
// }
// }
// else
// {
// unipaxSource = object.getUnipaxSource();
// }
return UniPAX::UIBase::merge(object);
}
