void
process_block(const bool is_in_region,
const unsigned end,
VcfRecord& vcfr) const {
if(end>vcfr.GetPos()) {
vcfr.SetInfoVal("END",_intstr.get32(end));
} else {
vcfr.DeleteInfoKeyVal("END");
}
if(is_in_region) make_record_haploid(vcfr);
vcfr.WriteUnaltered(_opt.outfp);
}
void
process_block(const bool is_in_region,
const unsigned end,
VcfRecord& vcfr) const {
if(! is_in_region) {
if(end>vcfr.GetPos()) {
vcfr.SetInfoVal("END",_intstr.get32(end));
} else {
vcfr.DeleteInfoKeyVal("END");
}
vcfr.WriteUnaltered(_opt.outfp);
} else {
vcfr.DeleteInfoKeyVal("END");
vcfr.WriteUnaltered(_opt.outfp);
while(end>vcfr.GetPos()) {
const int next_pos(vcfr.GetPos()+1);
vcfr.SetPos(next_pos);
vcfr.SetRef(_scp.get_char(vcfr.GetChrom().c_str(),next_pos));
vcfr.WriteUnaltered(_opt.outfp);
}
}
}