Ejemplos de VoxelDataContainer::getOrigin en C++ (Cpp)

Ejemplo n.º 1

Archivo: VoxelDataContainerWriter.cpp Proyecto: leavy/DREAM3D

// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
int VoxelDataContainerWriter::writeCellData(hid_t dcGid)
{
  std::stringstream ss;
  int err = 0;
  VoxelDataContainer* m = getVoxelDataContainer();
  int64_t volDims[3] =
  { m->getXPoints(), m->getYPoints(), m->getZPoints() };
  float spacing[3] =
  { m->getXRes(), m->getYRes(), m->getZRes() };
  float origin[3] =
  { 0.0f, 0.0f, 0.0f };
  m->getOrigin(origin);

  writeCellXdmfGridHeader(origin, spacing, volDims);


  // Get the name of the .dream3d file that we are writing to:
  ssize_t nameSize = H5Fget_name(m_HdfFileId, NULL, 0) + 1;
  std::vector<char> nameBuffer(nameSize, 0);
  nameSize = H5Fget_name(m_HdfFileId, &(nameBuffer.front()), nameSize);

  std::string hdfFileName(&(nameBuffer.front()), nameSize);
  hdfFileName = MXAFileInfo::filename(hdfFileName);
  std::string xdmfGroupPath = std::string(":/") + VoxelDataContainer::ClassName() + std::string("/") + H5_CELL_DATA_GROUP_NAME;

  // Write the Voxel Data
  err = H5Utilities::createGroupsFromPath(H5_CELL_DATA_GROUP_NAME, dcGid);
  if(err < 0)
  {
    ss.str("");
    ss << "Error creating HDF Group " << H5_CELL_DATA_GROUP_NAME << std::endl;
    setErrorCondition(-63);
    notifyErrorMessage(ss.str(), err);
    H5Gclose(dcGid); // Close the Data Container Group
    return err;
  }
  hid_t cellGroupId = H5Gopen(dcGid, H5_CELL_DATA_GROUP_NAME, H5P_DEFAULT);
  if(err < 0)
  {
    ss.str("");
    ss << "Error writing string attribute to HDF Group " << H5_CELL_DATA_GROUP_NAME << std::endl;
    setErrorCondition(-64);
    notifyErrorMessage(ss.str(), err);
    H5Gclose(dcGid); // Close the Data Container Group
    return err;
  }
  NameListType names = m->getCellArrayNameList();
  for (NameListType::iterator iter = names.begin(); iter != names.end(); ++iter)
  {
    ss.str("");
    ss << "Writing Cell Data '" << *iter << "' to HDF5 File" << std::endl;
    notifyStatusMessage(ss.str());
    IDataArray::Pointer array = m->getCellData(*iter);
    err = array->writeH5Data(cellGroupId);
    if(err < 0)
    {
      ss.str("");
      ss << "Error writing array '" << *iter << "' to the HDF5 File";
      notifyErrorMessage(ss.str(), err);
      setErrorCondition(err);
      H5Gclose(cellGroupId); // Close the Cell Group
      H5Gclose(dcGid); // Close the Data Container Group
      return err;
    }
    array->writeXdmfAttribute( *m_XdmfPtr, volDims, hdfFileName, xdmfGroupPath, " (Cell)");
  }
  H5Gclose(cellGroupId); // Close the Cell Group
  writeXdmfGridFooter("Cell Data");
  return err;
}

Ejemplo n.º 2

Archivo: VoxelDataContainerWriter.cpp Proyecto: leavy/DREAM3D

// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void VoxelDataContainerWriter::execute()
{
  int err = 0;
  std::stringstream ss;
  setErrorCondition(err);
  VoxelDataContainer* m = getVoxelDataContainer();
  if(NULL == m)
  {
    setErrorCondition(-999);
    notifyErrorMessage("The Voxel DataContainer Object was NULL", -999);
    return;
  }
  setErrorCondition(0);
  dataCheck(false, 1, 1, 1);
  hid_t dcGid = -1;



  // Create the HDF5 Group for the Data Container
  err = H5Utilities::createGroupsFromPath(DREAM3D::HDF5::VoxelDataContainerName.c_str(), m_HdfFileId);
  if (err < 0)
  {
    ss.str("");
    ss << "Error creating HDF Group " << DREAM3D::HDF5::VoxelDataContainerName << std::endl;
    setErrorCondition(-60);
    notifyErrorMessage( ss.str(), err);
    return;
  }
  dcGid = H5Gopen(m_HdfFileId, DREAM3D::HDF5::VoxelDataContainerName.c_str(), H5P_DEFAULT );
  if (dcGid < 0)
  {
    ss.str("");
    ss << "Error opening Group " << DREAM3D::HDF5::VoxelDataContainerName << std::endl;
    setErrorCondition(-61);
    notifyErrorMessage( ss.str(), err);
    return;
  }

  // This just writes the header information
  int64_t volDims[3] =
  { m->getXPoints(), m->getYPoints(), m->getZPoints() };
  float spacing[3] =
  { m->getXRes(), m->getYRes(), m->getZRes() };
  float origin[3] =
  { 0.0f, 0.0f, 0.0f };
  m->getOrigin(origin);
  err = writeMetaInfo(DREAM3D::HDF5::VoxelDataContainerName, volDims, spacing, origin);
  if (err < 0)
  {
    ss.str("");
    ss <<  ":Error Writing header information to output file" << std::endl;
    setErrorCondition(-62);
    notifyErrorMessage( ss.str(), err);
    H5Gclose(dcGid); // Close the Data Container Group
    return;
  }

  err = writeVertexData(dcGid);
  if (err < 0)
  {
    H5Gclose(dcGid); // Close the Data Container Group
    return;
  }

  err = writeEdgeData(dcGid);
  if (err < 0)
  {
    H5Gclose(dcGid); // Close the Data Container Group
    return;
  }

  err = writeFaceData(dcGid);
  if (err < 0)
  {
    H5Gclose(dcGid); // Close the Data Container Group
    return;
  }

  err = writeCellData(dcGid);
  if (err < 0)
  {
    H5Gclose(dcGid); // Close the Data Container Group
    return;
  }

  err = writeFieldData(dcGid);
  if (err < 0)
  {
    H5Gclose(dcGid); // Close the Data Container Group
    return;
  }

  err = writeEnsembleData(dcGid);
  if (err < 0)
  {
    H5Gclose(dcGid); // Close the Data Container Group
    return;
  }

  // Now finally close the group and the HDf5 File
  H5Gclose(dcGid); // Close the Data Container Group



  notifyStatusMessage("Complete");
}