void write_mlinfo(const std::vector<std::ofstream*>& outfile, unsigned int file,
const mlinfo& mli, int csnp, const cmdvars& input_var,
int gcount, double freq)
{
*outfile[file] << mli.name[csnp]
<< input_var.getSep()
<< mli.A1[csnp]
<< input_var.getSep()
<< mli.A2[csnp]
<< input_var.getSep()
<< mli.Freq1[csnp]
<< input_var.getSep()
<< mli.MAF[csnp]
<< input_var.getSep()
<< mli.Quality[csnp]
<< input_var.getSep()
<< mli.Rsq[csnp]
<< input_var.getSep()
<< gcount
<< input_var.getSep()
<< freq;
if (input_var.getChrom() != "-1")
{
*outfile[file] << input_var.getSep() << input_var.getChrom();
}
if (input_var.getMapfilename() != NULL)
{
*outfile[file] << input_var.getSep() << mli.map[csnp];
}
}
void create_start_of_header(std::vector<std::ofstream*>& outfile,
cmdvars& input_var, phedata& phd)
{
for (unsigned int i = 0; i < outfile.size(); i++)
{
(*outfile[i]) << "name" << input_var.getSep()
<< "A1" << input_var.getSep()
<< "A2" << input_var.getSep()
<< "Freq1" << input_var.getSep()
<< "MAF" << input_var.getSep()
<< "Quality" << input_var.getSep()
<< "Rsq" << input_var.getSep()
<< "n" << input_var.getSep()
<< "Mean_predictor_allele";
if (input_var.getChrom() != "-1")
(*outfile[i]) << input_var.getSep() << "chrom";
if (input_var.getMapfilename() != NULL)
(*outfile[i]) << input_var.getSep() << "position";
}
if (input_var.getAllcov()) //All covariates in output
{
for (unsigned int file = 0; file < outfile.size(); file++)
for (int i = 0; i < phd.n_model_terms - 1; i++)
*outfile[file] << input_var.getSep()
<< "beta_" << phd.model_terms[i]
<< input_var.getSep() << "sebeta_"
<< phd.model_terms[i];
}
}