Ejemplo n.º 1
0
// Alpha-nDCG Computation
static arma::rowvec compute_andcg_discount(arma::rowvec subtopics, double alpha){
    // Iterate through the elements in the vector and compute (1- alpha)^x
    arma::rowvec discount = arma::zeros<arma::rowvec>(subtopics.n_cols);
    int i =0;
    for(arma::rowvec::iterator it=subtopics.begin(); it!=subtopics.end(); ++it){
        discount(i++) = pow((1 - alpha),(*it));
    }
    return discount;
}
Ejemplo n.º 2
0
/** For debugging reasons*/ 
  void checkAllComponents() {
   
    arma::vec rowSumA = arma::sum(A_, 1);
    rowSumA.print("rowSumA");
    double sumPi = arma::sum(pi_);
    std::cout << "sumPi: " << sumPi << std::endl;
    arma::vec weights = arma::zeros((unsigned int)BModels_.size());
    for (unsigned int i = 0; i < (unsigned int) BModels_.size(); ++i) {
      weights(i) = arma::accu(BModels_[i].getWeights());
    }
    weights.print("bCumWeights");

    arma::rowvec checksum = arma::sum(gamma_);
    checksum.print("checksum");
    arma::uvec checksumIndices = arma::find(checksum < 1.0 - 1E-2);
    if (checksumIndices.n_elem >= 1) {
      arma::rowvec checksumAlpha = arma::sum(alpha_);
      checksumAlpha.print("checkAlpha");
      //alpha_.print("alpha");
      arma::rowvec checksumBeta = arma::sum(beta_);
      checksumBeta.print("checkBeta");
      //beta_.print("beta");
      c_.print("c");
      throw std::runtime_error("data going wonky");
    }


    if (!arma::is_finite(A_)) {
      A_.print("A Fail");
      throw std::runtime_error("A has invalid entries");
    }
    if (!arma::is_finite(pi_)) {
      pi_.print("pi Fail");
      throw std::runtime_error("pi has invalid entries");
    }
    if (!arma::is_finite(alpha_)) {
      alpha_.print("alpha Fail");
      throw std::runtime_error("alpha has invalid entries");
    }
    if (!arma::is_finite(beta_)) {
      beta_.print("beta Fail");
      throw std::runtime_error("beta has invalid entries");
    }
    if (!arma::is_finite(gamma_)) {
      gamma_.print("gamma Fail");
      throw std::runtime_error("gamma has invalid entries");
    }
    if (!arma::is_finite(xi_)) {
      xi_.print("xi Fail");
      throw std::runtime_error("xi has invalid entries");
    }
  }
Ejemplo n.º 3
0
  void
    print(std::string header = "") {
      A_.print("A");
      for (size_t i = 0; i < BModels_.size(); ++i) {
        BModels_[i].print("B");
      }
      pi_.print("pi");

    }
Ejemplo n.º 4
0
void Adaboost<MatType, WeakLearner>::buildWeightMatrix(
                                     const arma::mat& D, arma::rowvec& weights)
{
  int i, j;
  weights.fill(0.0);

  for (i = 0;i < D.n_rows; i++)
  {
    for (j = 0;j < D.n_cols; j++)
      weights(i) += D(i,j);
  }
}
Ejemplo n.º 5
0
void pca::read_armvct (const char * fname, arma::rowvec & q)
{
  int n;
  std::ifstream myfileq(fname, std::ios::binary);
  myfileq.read((char*)&(n), sizeof(n));
  q.set_size(n);
  for (int i=0; i<(int)q.n_cols; i++)
  {
    double v;
    myfileq.read((char*)&v, sizeof(v));

    q(i) = v;
  }
  myfileq.close();
}
Ejemplo n.º 6
0
double DecisionStump<MatType>::SetupSplitDimension(
    const arma::rowvec& dimension,
    const arma::Row<size_t>& labels,
    const arma::rowvec& weights)
{
  size_t i, count, begin, end;
  double entropy = 0.0;

  // Sort the dimension in order to calculate splitting ranges.
  arma::rowvec sortedDim = arma::sort(dimension);

  // Store the indices of the sorted dimension to build a vector of sorted
  // labels.  This sort is stable.
  arma::uvec sortedIndexDim = arma::stable_sort_index(dimension.t());

  arma::Row<size_t> sortedLabels(dimension.n_elem);
  arma::rowvec sortedWeights(dimension.n_elem);

  for (i = 0; i < dimension.n_elem; i++)
  {
    sortedLabels(i) = labels(sortedIndexDim(i));

    // Apply weights if necessary.
    if (UseWeights)
      sortedWeights(i) = weights(sortedIndexDim(i));
  }

  i = 0;
  count = 0;

  // This splits the sorted data into buckets of size greater than or equal to
  // bucketSize.
  while (i < sortedLabels.n_elem)
  {
    count++;
    if (i == sortedLabels.n_elem - 1)
    {
      // If we're at the end, then don't worry about the bucket size; just take
      // this as the last bin.
      begin = i - count + 1;
      end = i;

      // Use ratioEl to calculate the ratio of elements in this split.
      const double ratioEl = ((double) (end - begin + 1) / sortedLabels.n_elem);

      entropy += ratioEl * CalculateEntropy<UseWeights>(
          sortedLabels.subvec(begin, end), sortedWeights.subvec(begin, end));
      i++;
    }
    else if (sortedLabels(i) != sortedLabels(i + 1))
    {
      // If we're not at the last element of sortedLabels, then check whether
      // count is less than the current bucket size.
      if (count < bucketSize)
      {
        // If it is, then take the minimum bucket size anyways.
        // This is where the inpBucketSize comes into use.
        // This makes sure there isn't a bucket for every change in labels.
        begin = i - count + 1;
        end = begin + bucketSize - 1;

        if (end > sortedLabels.n_elem - 1)
          end = sortedLabels.n_elem - 1;
      }
      else
      {
        // If it is not, then take the bucket size as the value of count.
        begin = i - count + 1;
        end = i;
      }
      const double ratioEl = ((double) (end - begin + 1) / sortedLabels.n_elem);

      entropy += ratioEl * CalculateEntropy<UseWeights>(
          sortedLabels.subvec(begin, end), sortedWeights.subvec(begin, end));

      i = end + 1;
      count = 0;
    }
    else
      i++;
  }
  return entropy;
}
Ejemplo n.º 7
0
 double mahalanobis(const arma::rowvec& x, const arma::rowvec& mu, const arma::mat& sigma) {
   const arma::rowvec err = x - mu;
   return arma::as_scalar(err * sigma.i() * err.t());
 }
Ejemplo n.º 8
0
 double mahalanobis_chol(const arma::rowvec& x, const arma::rowvec& mu, const arma::mat& R) {
   const arma::rowvec err = x - mu;
   const arma::mat Rinv(inv(trimatl(R)));
   return arma::as_scalar(err * Rinv * Rinv.t() * err.t());
 }
Ejemplo n.º 9
0
void DecisionStump<MatType>::TrainOnAtt(const arma::rowvec& attribute,
                                        const arma::Row<size_t>& labels)
{
  size_t i, count, begin, end;

  arma::rowvec sortedSplitAtt = arma::sort(attribute);
  arma::uvec sortedSplitIndexAtt = arma::stable_sort_index(attribute.t());
  arma::Row<size_t> sortedLabels(attribute.n_elem);
  sortedLabels.fill(0);
  arma::vec tempSplit;
  arma::Row<size_t> tempLabel;

  for (i = 0; i < attribute.n_elem; i++)
    sortedLabels(i) = labels(sortedSplitIndexAtt(i));

  arma::rowvec subCols;
  rType mostFreq;
  i = 0;
  count = 0;
  while (i < sortedLabels.n_elem)
  {
    count++;
    if (i == sortedLabels.n_elem - 1)
    {
      begin = i - count + 1;
      end = i;

      arma::rowvec zSubCols((sortedLabels.cols(begin, end)).n_elem);
      zSubCols.fill(0.0);

      subCols = sortedLabels.cols(begin, end) + zSubCols;

      mostFreq = CountMostFreq<double>(subCols);

      split.resize(split.n_elem + 1);
      split(split.n_elem - 1) = sortedSplitAtt(begin);
      binLabels.resize(binLabels.n_elem + 1);
      binLabels(binLabels.n_elem - 1) = mostFreq;

      i++;
    }
    else if (sortedLabels(i) != sortedLabels(i + 1))
    {
      if (count < bucketSize)
      {
        // Test for different values of bucketSize, especially extreme cases.
        begin = i - count + 1;
        end = begin + bucketSize - 1;

        if (end > sortedLabels.n_elem - 1)
          end = sortedLabels.n_elem - 1;
      }
      else
      {
        begin = i - count + 1;
        end = i;
      }
      arma::rowvec zSubCols((sortedLabels.cols(begin, end)).n_elem);
      zSubCols.fill(0.0);

      subCols = sortedLabels.cols(begin, end) + zSubCols;

      // Find the most frequent element in subCols so as to assign a label to
      // the bucket of subCols.
      mostFreq = CountMostFreq<double>(subCols);

      split.resize(split.n_elem + 1);
      split(split.n_elem - 1) = sortedSplitAtt(begin);
      binLabels.resize(binLabels.n_elem + 1);
      binLabels(binLabels.n_elem - 1) = mostFreq;

      i = end + 1;
      count = 0;
    }
    else
      i++;
  }

  // Now trim the split matrix so that buckets one after the after which point
  // to the same classLabel are merged as one big bucket.
  MergeRanges();
}