mitk::Image::Pointer mitk::ITKDICOMSeriesReaderHelper::Load( const StringContainer& filenames,
bool correctTilt,
const GantryTiltInformation& tiltInfo )
{
if ( filenames.empty() )
{
MITK_DEBUG
<< "Calling LoadDicomSeries with empty filename string container. Probably invalid application logic.";
return nullptr; // this is not actually an error but the result is very simple
}
typedef itk::GDCMImageIO DcmIoType;
DcmIoType::Pointer io = DcmIoType::New();
try
{
if ( io->CanReadFile( filenames.front().c_str() ) )
{
io->SetFileName( filenames.front().c_str() );
io->ReadImageInformation();
if ( io->GetPixelType() == itk::ImageIOBase::SCALAR )
{
switch ( io->GetComponentType() )
{
switch3DCase(DcmIoType::UCHAR, unsigned char) switch3DCase(DcmIoType::CHAR, char) switch3DCase(
DcmIoType::USHORT, unsigned short) switch3DCase(DcmIoType::SHORT, short)
switch3DCase(DcmIoType::UINT, unsigned int) switch3DCase(DcmIoType::INT, int) switch3DCase(
DcmIoType::ULONG, long unsigned int) switch3DCase(DcmIoType::LONG, long int)
switch3DCase(DcmIoType::FLOAT, float) switch3DCase(DcmIoType::DOUBLE, double) default
: MITK_ERROR
<< "Found unsupported DICOM scalar pixel type: (enum value) "
<< io->GetComponentType();
}
}
else if ( io->GetPixelType() == itk::ImageIOBase::RGB )
{
switch ( io->GetComponentType() )
{
switch3DCase(DcmIoType::UCHAR, itk::RGBPixel<unsigned char>) switch3DCase(
DcmIoType::CHAR, itk::RGBPixel<char>) switch3DCase(DcmIoType::USHORT,
itk::RGBPixel<unsigned short>)
switch3DCase(DcmIoType::SHORT, itk::RGBPixel<short>) switch3DCase(
DcmIoType::UINT, itk::RGBPixel<unsigned int>) switch3DCase(DcmIoType::INT, itk::RGBPixel<int>)
switch3DCase(DcmIoType::ULONG, itk::RGBPixel<long unsigned int>)
switch3DCase(DcmIoType::LONG, itk::RGBPixel<long int>) switch3DCase(
DcmIoType::FLOAT, itk::RGBPixel<float>) switch3DCase(DcmIoType::DOUBLE,
itk::RGBPixel<double>) default
: MITK_ERROR
<< "Found unsupported DICOM scalar pixel type: (enum value) "
<< io->GetComponentType();
}
}
MITK_ERROR << "Unsupported DICOM pixel type";
return nullptr;
}
Image::Pointer DicomSeriesReader::MultiplexLoadDICOMByITK4DScalar(std::list<StringContainer> &imageBlocks,
ImageBlockDescriptor imageBlockDescriptor,
bool correctTilt,
const GantryTiltInformation &tiltInfo,
DcmIoType::Pointer &io,
CallbackCommand *command,
Image::Pointer preLoadedImageBlock)
{
switch (io->GetComponentType())
{
case DcmIoType::UCHAR:
return LoadDICOMByITK4D<unsigned char>(
imageBlocks, imageBlockDescriptor, correctTilt, tiltInfo, io, command, preLoadedImageBlock);
case DcmIoType::CHAR:
return LoadDICOMByITK4D<char>(
imageBlocks, imageBlockDescriptor, correctTilt, tiltInfo, io, command, preLoadedImageBlock);
case DcmIoType::USHORT:
return LoadDICOMByITK4D<unsigned short>(
imageBlocks, imageBlockDescriptor, correctTilt, tiltInfo, io, command, preLoadedImageBlock);
case DcmIoType::SHORT:
return LoadDICOMByITK4D<short>(
imageBlocks, imageBlockDescriptor, correctTilt, tiltInfo, io, command, preLoadedImageBlock);
case DcmIoType::UINT:
return LoadDICOMByITK4D<unsigned int>(
imageBlocks, imageBlockDescriptor, correctTilt, tiltInfo, io, command, preLoadedImageBlock);
case DcmIoType::INT:
return LoadDICOMByITK4D<int>(
imageBlocks, imageBlockDescriptor, correctTilt, tiltInfo, io, command, preLoadedImageBlock);
case DcmIoType::ULONG:
return LoadDICOMByITK4D<long unsigned int>(
imageBlocks, imageBlockDescriptor, correctTilt, tiltInfo, io, command, preLoadedImageBlock);
case DcmIoType::LONG:
return LoadDICOMByITK4D<long int>(
imageBlocks, imageBlockDescriptor, correctTilt, tiltInfo, io, command, preLoadedImageBlock);
case DcmIoType::FLOAT:
return LoadDICOMByITK4D<float>(
imageBlocks, imageBlockDescriptor, correctTilt, tiltInfo, io, command, preLoadedImageBlock);
case DcmIoType::DOUBLE:
return LoadDICOMByITK4D<double>(
imageBlocks, imageBlockDescriptor, correctTilt, tiltInfo, io, command, preLoadedImageBlock);
default:
MITK_ERROR << "Found unsupported DICOM scalar pixel type: (enum value) " << io->GetComponentType();
return nullptr;
}
}