int main(int argc, char ** argv)
{
// Load up the image
//
//
//
ImageFileReader::Pointer reader = ImageFileReader::New();
ImageIOType::Pointer imageIO = ImageIOType::New();
reader->SetImageIO(imageIO);
reader->SetFileName(argv[1]);
reader->Update();
typedef itk::BinaryNeighbourhoodImageFilter<ImageType, ImageType> BNFilter;
BNFilter::Pointer bnFilter = BNFilter::New();
QuickView viewer;
//viewer.AddImage(reader->GetOutput());
return 0;
}
void FindImageRunnable::GDCImageIORead(const std::vector<std::string>& files)
{
using std::string;
using std::vector;
using itk::GDCMImageIO;
typedef itk::ImageFileReader<itk::Image<unsigned short, 2>> ImageFileReader;
string _file = files[0];
string patientName = "/";
string modality = "/";
string seriesDescription = "/";
string slice = "/";
string date = "/";
string seriesUID = "/";
string format = "/";
try {
GDCMImageIO::Pointer dicomIO = GDCMImageIO::New();
ImageFileReader::Pointer imageFilerReader = ImageFileReader::New();
imageFilerReader->SetNumberOfThreads(4);
imageFilerReader->SetImageIO(dicomIO);
imageFilerReader->SetFileName(_file);
imageFilerReader->Update();
if (!dicomIO->GetValueFromTag(("0010|0010"), patientName)) {
//patientName = "/";
}
if (!dicomIO->GetValueFromTag("0008|0060", modality)) {
//modality = "/";
}
if (!dicomIO->GetValueFromTag("0008|103e", seriesDescription)) {
//seriesDescription = "/";
}
if (!dicomIO->GetValueFromTag("0020|1002", slice)) {
//slice = "/";
slice = std::to_string(files.size());
}
if (!dicomIO->GetValueFromTag("0008|0020", date)) {
//date = "/";
}
if (!dicomIO->GetValueFromTag("0020|0052", seriesUID)) {
//seriesUID = "/";
}
}
catch (itk::ExceptionObject& e) {
patientName = QFileInfo(QString::fromStdString(_file)).baseName().toStdString();
qDebug() << "Input are not DICOM images.";
qDebug() << "Input are assumed to be NIFTI.";
qDebug() << e.what();
}
QString _emitString;
_emitString += QString::fromStdString(patientName) + '\t';
_emitString += QString::fromStdString(modality) + '\t';
_emitString += QString::fromStdString(seriesDescription) + '\t';
_emitString += QString::fromStdString(slice) + '\t';
_emitString += QString::fromStdString(date) + '\t';
_emitString += QString::fromStdString(seriesUID) + '\t';
_emitString += QString::fromStdString(format) + '\t';
for (vector<string>::const_iterator cit = files.cbegin();
cit != files.cend(); ++cit) {
_emitString += QString::fromStdString(*cit);
_emitString += ';';
}
_emitString += QString::fromStdString(_file);
emit addTreeWidgetItem(_emitString);
}
void ConclusionPage::initializePage()
{
using itk::GDCMImageIO;
using itk::MetaDataDictionary;
using std::string;
typedef itk::ImageFileReader<itk::Image<unsigned short, 2>> ImageFileReader;
using itk::MetaDataObjectBase;
typedef itk::MetaDataObject<string> MetaDataString;
tabWidget->clear();
for (int i = 0; i < m_tableWidgets.size(); ++i) {
QString fieldStringImageSet;
fieldStringImageSet += "image.set";
fieldStringImageSet += QString::number(i);
QString imageSet = field(fieldStringImageSet).toString();
if (imageSet.isEmpty()) {
continue;
}
if (m_tableWidgets[i] == nullptr) {
m_tableWidgets[i] = new QTableWidget(this);
}
tabWidget->addTab(m_tableWidgets[i], imageSet);
//m_tableWidgets[i]->clear();
m_tableWidgets[i]->setEditTriggers(QTableWidget::NoEditTriggers);
m_tableWidgets[i]->setColumnCount(3);
m_tableWidgets[i]->setRowCount(0);
m_tableWidgets[i]->setHorizontalHeaderLabels(QStringList()
<< "Tag" << "Label" << "Description");
m_tableWidgets[i]->horizontalHeader()->setSectionResizeMode(QHeaderView::Stretch);
m_tableWidgets[i]->verticalHeader()->setVisible(false);
try {
GDCMImageIO::Pointer dicomIO = GDCMImageIO::New();
ImageFileReader::Pointer reader = ImageFileReader::New();
QString fieldStringImagePath;
fieldStringImagePath += "image.path";
fieldStringImagePath += QString::number(i);
QStringList imagePaths = field(fieldStringImagePath).toString().split(';');
if (imagePaths[0].isEmpty()) {
continue;
}
reader->SetFileName(imagePaths[0].toStdString());
qDebug() << imagePaths;
reader->SetImageIO(dicomIO);
reader->Update();
const MetaDataDictionary& dictionary = dicomIO->GetMetaDataDictionary();
for (MetaDataDictionary::ConstIterator cit = dictionary.Begin();
cit != dictionary.End(); ++cit) {
MetaDataObjectBase::Pointer entry = cit->second;
MetaDataString::Pointer entryValue = static_cast<MetaDataString*>(
entry.GetPointer());
if (entryValue) {
m_tableWidgets[i]->insertRow(m_tableWidgets[i]->rowCount());
string tag = cit->first;
string label;
string value = entryValue->GetMetaDataObjectValue();
m_tableWidgets[i]->setItem(m_tableWidgets[i]->rowCount() - 1, 2,
new QTableWidgetItem(QString::fromStdString(value)));
m_tableWidgets[i]->setItem(m_tableWidgets[i]->rowCount() - 1, 0,
new QTableWidgetItem(QString::fromStdString(tag)));
if (GDCMImageIO::GetLabelFromTag(tag, label)) {
m_tableWidgets[i]->setItem(m_tableWidgets[i]->rowCount() - 1, 1,
new QTableWidgetItem(QString::fromStdString(label)));
}
else {
m_tableWidgets[i]->setItem(m_tableWidgets[i]->rowCount() - 1, 1,
new QTableWidgetItem(tr("Unknown")));
}
}
}
}
catch (itk::ExceptionObject& e) {
qDebug() << "Inputs are not DICOM images.";
qDebug() << e.what();
}
//if (!(*m_DICOMHeaders)[i].isNull()) {
// int tableRow = 0;
// m_tableWidgets[i]->setRowCount((*m_DICOMHeaders).size());
// m_tableWidgets[i]->setColumnCount(2);
// for (QMap<QString, QString>::const_iterator cit = (*m_DICOMHeaders)[i]->constBegin();
// cit != (*m_DICOMHeaders)[i]->constEnd(); ++cit) {
// qDebug() << cit.key();
// qDebug() << cit.value();
// m_tableWidgets[i]->setItem(tableRow, 0, new QTableWidgetItem(cit.key()));
// m_tableWidgets[i]->setItem(tableRow, 1, new QTableWidgetItem(cit.value()));
// ++tableRow;
// }
//}
}
}