Ejemplo n.º 1
0
void convertHitsToASQG(const std::string& indexPrefix, const StringVector& hitsFilenames, std::ostream* pASQGWriter)
{
    // Load the suffix array index and the reverse suffix array index
    // Note these are not the full suffix arrays
    SuffixArray* pFwdSAI = new SuffixArray(indexPrefix + SAI_EXT);
    SuffixArray* pRevSAI = new SuffixArray(indexPrefix + RSAI_EXT);

    // Load the ReadInfoTable for the queries to look up the ID and lengths of the hits
    ReadInfoTable* pQueryRIT = new ReadInfoTable(opt::readsFile);

    // If the target file is not the query file, load its ReadInfoTable
    ReadInfoTable* pTargetRIT;
    if(!opt::targetFile.empty() && opt::targetFile != opt::readsFile)
        pTargetRIT = new ReadInfoTable(opt::targetFile);
    else
        pTargetRIT = pQueryRIT;

    bool bIsSelfCompare = pTargetRIT == pQueryRIT;

    // Convert the hits to overlaps and write them to the asqg file as initial edges
    for(StringVector::const_iterator iter = hitsFilenames.begin(); iter != hitsFilenames.end(); ++iter)
    {
        printf("[%s] parsing file %s\n", PROGRAM_IDENT, iter->c_str());
        std::istream* pReader = createReader(*iter);
    
        // Read each hit sequentially, converting it to an overlap
        std::string line;
        while(getline(*pReader, line))
        {
            size_t readIdx;
            size_t totalEntries;
            bool isSubstring;
            OverlapVector ov;
            OverlapCommon::parseHitsString(line, pQueryRIT, pTargetRIT, pFwdSAI, pRevSAI, bIsSelfCompare, readIdx, totalEntries, ov, isSubstring);
            for(OverlapVector::iterator iter = ov.begin(); iter != ov.end(); ++iter)
            {
                ASQG::EdgeRecord edgeRecord(*iter);
                edgeRecord.write(*pASQGWriter);
            }
        }
        delete pReader;

        // delete the hits file
        unlink(iter->c_str());
    }

    // Deallocate data
    if(pTargetRIT != pQueryRIT)
        delete pTargetRIT;
    delete pFwdSAI;
    delete pRevSAI;
    delete pQueryRIT;
}
Ejemplo n.º 2
0
 void RegistryComponent::SetComponentInfo(const ComponentInfo &info)
 {
   std::string KeyComponentClassId = Key_ComponentClassIDs;
   KeyComponentClassId += "/";
   StringVector ClassIDs = info.GetClassIDs();
   for (StringVector::const_iterator i = ClassIDs.begin() ; i != ClassIDs.end() ; ++i)
   {
     std::string ClassId = KeyComponentClassId;
     ClassId += *i;
     Reg.CreateKey(ClassId);
     Reg.SetValue(ClassId, info.GetModuleGuid().c_str());
   }
   std::string KeyComponentInformation = Key_ComponentInformation;
   KeyComponentInformation += "/";
   KeyComponentInformation += info.GetModuleGuid();
   KeyComponentInformation += "/";
   std::string Key = KeyComponentInformation;
   Key += Key_Type;
   Reg.CreateKey(Key);
   Reg.SetValue(Key, info.GetTypeAsStr().c_str());
   Key = KeyComponentInformation;
   Key += Key_ModuleName;
   Reg.CreateKey(Key);
   Reg.SetValue(Key, info.GetModuleName().c_str());
   Key = KeyComponentInformation;
   Key += Key_Location;
   Reg.CreateKey(Key);
   Reg.SetValue(Key, info.GetLocation().c_str());
   Key = KeyComponentInformation;
   Key += Key_Description;
   Reg.CreateKey(Key);
   Reg.SetValue(Key, info.GetDescription().c_str());
   Key = KeyComponentInformation;
   Key += Key_ClassIDs;
   Reg.CreateKey(Key);
   unsigned Index = 0;
   for (StringVector::const_iterator i = ClassIDs.begin() ; i != ClassIDs.end() ; ++i)
   {
     std::stringstream Io;
     Io << Key_ClassId << Index++;
     std::string ClassIdKey = Key + "/" + Io.str();
     Reg.CreateKey(ClassIdKey);
     Reg.SetValue(ClassIdKey, static_cast<const char*>(i->c_str()));
   }
 }
Ejemplo n.º 3
0
    //-----------------------------------------------------------------------
    void CgProgram::buildArgs(void)
    {
        StringVector args;
        if (!mCompileArgs.empty())
            args = StringUtil::split(mCompileArgs);

        StringVector::const_iterator i;
        if (mSelectedCgProfile == CG_PROFILE_VS_1_1)
        {
            // Need the 'dcls' argument whenever we use this profile
            // otherwise compilation of the assembler will fail
            bool dclsFound = false;
            for (i = args.begin(); i != args.end(); ++i)
            {
                if (*i == "dcls")
                {
                    dclsFound = true;
                    break;
                }
            }
            if (!dclsFound)
            {
                args.push_back("-profileopts");
				args.push_back("dcls");
            }
        }
        // Now split args into that god-awful char** that Cg insists on
        freeCgArgs();
        mCgArguments = new char*[args.size() + 1];
        int index = 0;
        for (i = args.begin(); i != args.end(); ++i, ++index)
        {
            mCgArguments[index] = new char[i->length() + 1];
            strcpy(mCgArguments[index], i->c_str());
        }
        // Null terminate list
        mCgArguments[index] = 0;


    }
void CLocation::SetMember(size_t i, const string& str)
{
    _ASSERTE(i < NB_MEMBER);

    switch (i)
    {
    case ID:
        m_ID = str;
        break;
    case NAME:
        m_name = str;
        break;
    case LAT:
        m_lat = ToDouble(str);
        break;
    case LON:
        m_lon = ToDouble(str);
        break;
    case ELEV:
        m_elev = ToDouble(str);
        break;
    case SSI:
    {
        StringVector SSIs(str.c_str(), "{}");
        for (StringVector::const_iterator it = SSIs.begin(); it != SSIs.end(); it++)
        {
            string::size_type pos = it->find(':', 0);
            if (pos < string::npos)
                SetSSI(it->substr(0, pos), it->substr(pos + 1));
        }

        break;
    }

    default:
        _ASSERTE(false);
    }
}
int main(int argc, char * argv[])
{
    try
    {
        Options options;
        options.descriptions.add_options()
            ("show-urls", "Show all the capability URLs")
            ;

        if (!options.ParseCommandLine(argc, argv))
        {
            return 0;
        }

        RetsSessionPtr session = options.RetsLogin();
        if (!session)
        {
            cout << "Login failed\n";
            return -1;
        }
        cout << "Logged in\n";
        
        LoginResponse * login = session->GetLoginResponse();
        CapabilityUrls * urls = session->GetCapabilityUrls();

        cout << "Member name: " << login->GetMemberName() << endl;
        cout << "Search URL: " << urls->GetSearchUrl() << endl;        
        cout << "Action:\n" << session->GetAction() << endl;
        
        if (session->GetDetectedRetsVersion() >= RETS_1_8)
        {
            try
            {
                cout << "User ID:"                          << login->GetUserID() << endl;
                cout << "User Class: "                      << login->GetUserClass() << endl;
                cout << "User Level: "                      << login->GetUserLevel() << endl;
                cout << "Agent Code: "                      << login->GetAgentCode() << endl;
                if (options.count("verbose"))
                {
                    cout << "Broker Code: "                 << login->GetBrokerCode() << endl;
                    cout << "Broker Branch: "               << login->GetBrokerBranch() << endl;
                    cout << "Metadata ID: "                 << login->GetMetadataID() << endl;
                    cout << "Metadata Version: "            << login->GetMetadataVersion() << endl;
                    cout << "Metadata Timestamp: "          << login->GetMetadataTimestamp() << endl;
                    cout << "Min Metadata Timestamp: "      << login->GetMinMetadataTimestamp() << endl;
                    cout << "Balance: "                     << login->GetBalance() << endl;
                    cout << "Timeout Seconds: "             << login->GetTimeout() << endl;
                    cout << "Password Expiration: "         << login->GetPasswordExpire() << endl;
                    cout << "Password Expiration Warn: "    << login->GetWarnPasswordExpirationDays() << endl;
                    cout << "OfficeList: "                  << login->GetOfficeList() << endl;
                    cout << "Standard Names Version: "      << login->GetStandardNamesVersion() << endl;
                    cout << "Vendor Name: "                 << login->GetVendorName() << endl;
                    cout << "Server Product Name: "         << login->GetServerProductName() << endl;
                    cout << "Operator Name: "               << login->GetOperatorName() << endl;
                    cout << "Role Name: "                   << login->GetRoleName() << endl;
                    cout << "Support Contact Information: " << login->GetSupportContactInformation() << endl;
                }
            }
            catch (RetsException & e)
            {
               /*
                * The ServerInformation Transaction is not supported.
                * Continue silently.
                */
            }
        }

        if (options.count("show-urls"))
        {
            /*
             * Action and Search URLs unconditionally shown above.
             */
            cout << "Change Password URL: " << urls->GetChangePasswordUrl() << endl;
            cout << "GetObject URL: " << urls->GetGetObjectUrl() << endl;
            cout << "Login Complete URL: " << urls->GetLoginCompleteUrl() << endl;
            cout << "Logout URL: " << urls->GetLogoutUrl() << endl;
            cout << "GetMetadata URL: " << urls->GetGetMetadataUrl() << endl;
            cout << "ServerInformation URL: " << urls->GetServerInformationUrl() << endl;
            cout << "Update URL: " << urls->GetUpdateUrl() << endl;
            if (session->GetDetectedRetsVersion() >= RETS_1_8)
            {
                cout << "Payload List URL: " << urls->GetPayloadListUrl() << endl;
            }
            cout << endl;
        }
        
        if (session->GetDetectedRetsVersion() == RETS_1_7)
        {
            try
            {
                ServerInformationResponseAPtr serverInfo = session->GetServerInformation();
                
                if (serverInfo.get())
                {
                    StringVector parameters = serverInfo->GetParameters();
                    StringVector::const_iterator i;
                    for (i = parameters.begin(); i != parameters.end(); i++)
                    {
                        if (i->empty())
                        {
                            continue;
                        }
                        cout << *i << ": " << serverInfo->GetValue(*i) << endl;
                    }
                }
            }
            catch (RetsException & e)
            {
               /*
                * The ServerInformation Transaction is not supported.
                * Continue silently.
                */
            }
        }

        if (session->GetDetectedRetsVersion() >= RETS_1_8)
        {
            try
            {
                PayloadListResultSetAPtr payloadList = session->GetPayloadList("");
                    
                if (options.count("verbose"))
                {
                    cout << setw(15) << "Class" << ": "
                    << setw(0) << payloadList->GetPayloadClass() << endl;
                    cout << setw(15) << "Resource" << ": "
                    << setw(0) << payloadList->GetPayloadResource() << endl;
                    cout << setw(15) << "Date" << ": "
                    << setw(0) << payloadList->GetPayloadDate() << endl;
                    cout << setw(15) << "Version" << ": "
                    << setw(0) << payloadList->GetPayloadVersion() << endl << endl;
                }
                
                while (payloadList->HasNext())
                {
                    StringVector columns = payloadList->GetColumns();
                    StringVector::const_iterator i;
                    for (i = columns.begin(); i != columns.end(); i++)
                    {
                        string column = *i;
                        cout << setw(15) << column << ": "
                        << setw(0) << payloadList->GetString(column) << endl;
                    }
                    cout << endl;                    
                }
            }
            catch (RetsException & e)
            {
                /*
                 * The GetPayloadList Transaction is not supported.
                 */
                cout << e.what() << endl;
            }
        }
        
        LogoutResponseAPtr logout = session->Logout();
        cout << "Logged out\n";
        if (logout.get())
        {
            cout << "Billing information: " << logout->GetBillingInfo()
                 << endl;
            cout << "Connect time: " << logout->GetConnectTime() << endl;
            cout << "Message: " << logout->GetLogoutMessage() << endl;
        }
    }
    catch (RetsException & e)
    {
        e.PrintFullReport(cerr);
        return 1;
    }
    catch (exception & e)
    {
        cerr << e.what() << endl;
        return 2;
    }
    return 0;
}
int main(int argc, char * argv[])
{
    try
    {
        Options options;
        if (!options.ParseCommandLine(argc, argv))
        {
            return 0;
        }

        RetsSessionPtr session = options.RetsLogin();
        if (!session)
        {
            cout << "Login failed\n";
            return -1;
        }

        if (session->GetDetectedRetsVersion() != session->GetRetsVersion())
        {
            cout << "** Warning, requested RETS version \"" 
                 << session->RetsVersionToString(session->GetRetsVersion())
                 << "\", got version \""
                 << session->RetsVersionToString(session->GetDetectedRetsVersion())
                 << "\" ** " << endl;
        }
        
        if (session->GetDetectedRetsVersion() == RETS_1_7)
        {
            try
            {
                ServerInformationResponseAPtr serverInfo = session->GetServerInformation();
                
                if (serverInfo.get())
                {
                    StringVector parameters = serverInfo->GetParameters();
                    StringVector::const_iterator i;
                    for (i = parameters.begin(); i != parameters.end(); i++)
                    {
                        if (i->empty())
                        {
                            continue;
                        }
                        cout << *i << ": " << serverInfo->GetValue(*i) << endl;
                    }
                }
            }
            catch (RetsException & e)
            {
               /*
                * The ServerInformation Transaction is not supported.
                * Continue silently.
                */
            }
        }

        RetsMetadata * metadata = session->GetMetadata();
        dumpSystem(metadata);
        dumpAllForeignKeys(metadata);
        dumpAllResources(metadata);

        session->Logout();
    }
    catch (RetsException & e)
    {
        e.PrintFullReport(cout);
        return 1;
    }
    catch (exception & e)
    {
        cout << e.what() << endl;
        return 2;
    }
    return 0;
}