/// Writes a FactorGraph to an output stream
ostream& operator << (ostream& os, const FactorGraph& fg) {
os << fg.nrFactors() << endl;
for( size_t I = 0; I < fg.nrFactors(); I++ ) {
os << endl;
os << fg.factor(I).vars().size() << endl;
for( VarSet::const_iterator i = fg.factor(I).vars().begin(); i != fg.factor(I).vars().end(); i++ )
os << i->label() << " ";
os << endl;
for( VarSet::const_iterator i = fg.factor(I).vars().begin(); i != fg.factor(I).vars().end(); i++ )
os << i->states() << " ";
os << endl;
size_t nr_nonzeros = 0;
for( size_t k = 0; k < fg.factor(I).states(); k++ )
if( fg.factor(I)[k] != 0.0 )
nr_nonzeros++;
os << nr_nonzeros << endl;
for( size_t k = 0; k < fg.factor(I).states(); k++ )
if( fg.factor(I)[k] != 0.0 ) {
char buf[20];
sprintf(buf,"%18.14g", fg.factor(I)[k]);
os << k << " " << buf << endl;
}
}
return(os);
}
SharedParameters::SharedParameters( std::istream &is, const FactorGraph &fg )
: _varsets(), _perms(), _varorders(), _estimation(NULL), _ownEstimation(true)
{
// Read the desired parameter estimation method from the stream
std::string est_method;
PropertySet props;
is >> est_method;
is >> props;
// Construct a corresponding object
_estimation = ParameterEstimation::construct( est_method, props );
// Read in the factors that are to be estimated
size_t num_factors;
is >> num_factors;
for( size_t sp_i = 0; sp_i < num_factors; ++sp_i ) {
std::string line;
while( line.size() == 0 && getline(is, line) )
;
std::vector<std::string> fields;
tokenizeString(line, fields, " \t");
// Lookup the factor in the factorgraph
if( fields.size() < 1 )
DAI_THROWE(INVALID_EMALG_FILE,"Empty line unexpected");
std::istringstream iss;
iss.str( fields[0] );
size_t factor;
iss >> factor;
const VarSet &vs = fg.factor(factor).vars();
if( fields.size() != vs.size() + 1 )
DAI_THROWE(INVALID_EMALG_FILE,"Number of fields does not match factor size");
// Construct the vector of Vars
std::vector<Var> var_order;
var_order.reserve( vs.size() );
for( size_t fi = 1; fi < fields.size(); ++fi ) {
// Lookup a single variable by label
size_t label;
std::istringstream labelparse( fields[fi] );
labelparse >> label;
VarSet::const_iterator vsi = vs.begin();
for( ; vsi != vs.end(); ++vsi )
if( vsi->label() == label )
break;
if( vsi == vs.end() )
DAI_THROWE(INVALID_EMALG_FILE,"Specified variables do not match the factor variables");
var_order.push_back( *vsi );
}
_varorders[factor] = var_order;
}
// Calculate the necessary permutations
setPermsAndVarSetsFromVarOrders();
}
/// Writes a FactorGraph to an output stream
std::ostream& operator<< ( std::ostream &os, const FactorGraph &fg ) {
os << fg.nrFactors() << endl;
for( size_t I = 0; I < fg.nrFactors(); I++ ) {
os << endl;
os << fg.factor(I).vars().size() << endl;
for( VarSet::const_iterator i = fg.factor(I).vars().begin(); i != fg.factor(I).vars().end(); i++ )
os << i->label() << " ";
os << endl;
for( VarSet::const_iterator i = fg.factor(I).vars().begin(); i != fg.factor(I).vars().end(); i++ )
os << i->states() << " ";
os << endl;
size_t nr_nonzeros = 0;
for( size_t k = 0; k < fg.factor(I).nrStates(); k++ )
if( fg.factor(I)[k] != (Real)0 )
nr_nonzeros++;
os << nr_nonzeros << endl;
for( size_t k = 0; k < fg.factor(I).nrStates(); k++ )
if( fg.factor(I)[k] != (Real)0 )
os << k << " " << setw(os.precision()+4) << fg.factor(I)[k] << endl;
}
return(os);
}