void use_erdosrenyi_graph_generator(const vle::devs::InitEventList& events)
{
vle::translator::graph_generator::parameter param{
std::bind(&Builder::graph_generator_make_model,
this,
std::placeholders::_1,
std::placeholders::_2,
std::placeholders::_3),
graph_generator_connectivity(),
directed
};
vle::translator::graph_generator gg(param);
if (events.exist("fraction"))
gg.make_erdos_renyi(*this,
generator,
model_number,
events.getDouble("fraction"),
events.getBoolean("allow-self-loops"));
else
gg.make_erdos_renyi(*this,
generator,
model_number,
events.getInt("edges_number"),
events.getBoolean("allow-self-loops"));
}
void use_1d_regular_graph_generator(const vle::devs::InitEventList& events)
{
vle::translator::regular_graph_generator::parameter param{
std::bind(&Builder::regular_graph_generator_make_model,
this,
std::placeholders::_1,
std::placeholders::_2,
std::placeholders::_3),
regular_graph_generator_connectivity()
};
vle::translator::regular_graph_generator rgg(param);
const auto& v = events.getSet("mask").value();
std::vector<std::string> mask;
std::transform(v.begin(),
v.end(),
std::back_inserter(mask),
[](const auto& v) { return v->toString().value(); });
rgg.make_1d(*this,
events.getInt("lenght"),
events.getBoolean("graph-wrap"),
mask,
events.getInt("x-mask"));
}
TimeSlicingMethod(DifferentialEquation& eq,
const vd::InitEventList& events) :
DifferentialEquationImpl(eq, events), devs_state(INIT),
devs_options(), devs_guards(), devs_internal(),
int_method(*this, events)
{
if (events.exist("output_period")) {
const value::Value& v = *(events.get("output_period"));
devs_options.output_period = 0;
if (v.isInteger()) {
devs_options.output_period = v.toInteger().value();
}
if (devs_options.output_period < 1) {
throw utils::ModellingError(vle::utils::format(
"[%s] Parameter 'output_period' should be an int > 0",
getModelName().c_str()));
}
}
if (events.exist("time_step")) {
devs_options.dt = events.getDouble("time_step");
if (devs_options.dt <= 0) {
throw utils::ModellingError(vle::utils::format(
"[%s] Parameter 'time_step' should be > 0",
getModelName().c_str()));
}
}
}
Generator(const vd::DynamicsInit& init, const vd::InitEventList& events)
: vd::Dynamics(init, events)
{
vg::ConnectionList my_list;
// m_duration = vv::toDouble(events.get("duration"));
m_duration = 0.1;
if (events.end() != events.find("source_init_level")) {
m_val = vv::toDouble(events.get("source_init_level"));
} else {
m_val = 1;
Trace(6,
"Warning : Model %s got no init"
" output level (source_init_level) : assuming 1\n",
getModelName().c_str());
}
if (events.end() != events.find("source_trend")) {
m_trend = vv::toDouble(events.get("source_trend"));
if (events.end() != events.find("source_quantum")) {
m_quantum = vv::toDouble(events.get("source_quantum"));
} else {
m_quantum = 0.01;
Trace(6,
"Warning : Model %s got no output"
" quantum (source_quantum) : assuming 0.01\n",
getModelName().c_str());
}
} else {
m_trend = 0;
Trace(6,
"%s got no output trend (source_trend)"
" : assuming 0\n",
getModelName().c_str());
// no trend => quantum is useless but..
m_quantum = 0.01;
}
if (0 == m_quantum) {
throw vu::ModellingError("Model %s has null output quantum.",
getModelName().c_str());
}
m_has_output_port = false;
my_list = getModel().getOutputPortList();
if (my_list.size() > 0) {
m_output_port_label = (my_list.begin())->first;
m_has_output_port = true;
}
if (my_list.size() > 1) {
Trace(6,
"Warning: multiple output ports."
" Will use only port %s\n",
m_output_port_label.c_str());
}
}
Rm(const vle::devs::DynamicsInit& model,
const vle::devs::InitEventList& events) :
DifferentialEquation(model,events)
{
gamma = events.getDouble("gamma"); //= 0.2
nu = events.getDouble("nu");// = 0.0
R.init(this, "R", events);
S.init(this, "S", events);
I.init(this, "I", events);
}
Rm(const vle::devs::DynamicsInit& model,
const vle::devs::InitEventList& events) :
ved::DifferentialEquation(model,events)
{
gamma = events.getDouble("gamma"); //= 0.2
nu = events.getDouble("nu");// = 0.0
R = createVar("R");
S = createExt("S");
I = createExt("I");
}
LotkaVolterraY(const vle::devs::DynamicsInit& model,
const vle::devs::InitEventList& events) :
DifferentialEquation(model,events)
{
gamma = (events.exist("gamma"))
? events.getDouble("gamma") : 0.5;
delta = (events.exist("delta"))
? events.getDouble("delta") : 0.5;
Y.init(this, "Y", events);
X.init(this, "X", events);
}
LotkaVolterraX(const vle::devs::DynamicsInit& model,
const vle::devs::InitEventList& events) :
ved::DifferentialEquation(model,events)
{
alpha = (events.exist("alpha"))
? events.getDouble("alpha") : 0.5;
beta = (events.exist("beta"))
? events.getDouble("beta") : 0.5;
X = createVar("X");
Y = createExt("Y");
}
LotkaVolterraY(const vle::devs::DynamicsInit& model,
const vle::devs::InitEventList& events) :
ved::DifferentialEquation(model,events)
{
gamma = (events.exist("gamma"))
? events.getDouble("gamma") : 0.5;
delta = (events.exist("delta"))
? events.getDouble("delta") : 0.5;
Y = createVar("Y");
X = createExt("X");
}
Sm(const vle::devs::DynamicsInit& model,
const vle::devs::InitEventList& events) :
ved::DifferentialEquation(model,events)
{
beta = events.getDouble("beta");// = 0.9
nu = events.getDouble("nu");// = 0.0
S = createVar("S");
E = createExt("E");
I = createExt("I");
R = createExt("R");
}
ExBohachevsky(const vd::DynamicsInit& init, const vd::InitEventList& events) :
vd::Dynamics(init,events)
{
x1 = events.getDouble("x1");
x2 = events.getDouble("x2");
my = pow(x1,2) + 2 * pow(x2,2) - 0.3 * cos(3 * M_PI * x1)
- 0.4 * cos(4 * M_PI * x2) + 0.7;
mrand.seed(events.getInt("seed"));
double noise = mrand.normal(0,0.1);
my_noise = my + noise;
}
void use_defined_graph_generator(const vle::devs::InitEventList& events)
{
vle::utils::Array<bool> userdefined(model_number, model_number);
{
const auto& v = events.getTuple("user-defined");
if (v.size() != vle::utils::numeric_cast<std::size_t>(
model_number * model_number))
throw vle::utils::ModellingError(
"User defined model size error");
int pos = 0;
for (int i = 0; i != model_number; ++i)
for (int j = 0; j != model_number; ++j, ++pos)
userdefined(i, j) = (v.get(pos) != 0.0);
}
vle::translator::graph_generator::parameter param{
std::bind(&Builder::graph_generator_make_model,
this,
std::placeholders::_1,
std::placeholders::_2,
std::placeholders::_3),
graph_generator_connectivity(),
directed
};
vle::translator::graph_generator gg(param);
gg.make_graph(*this, model_number, userdefined);
}
M(
const vd::DynamicsInit& init,
const vd::InitEventList& events)
: ve::DifferentialEquation(init, events)
{
C3 = createVar("C3");
C1 = createVar("C1");
DSAT = createVar("DSAT");
C2 = createVar("C2");
if (events.exist("p1"))
p1 = events.getDouble("p1");
else
throw vle::utils::ModellingError("Parameter p1 not found");
}
Seir(const vle::devs::DynamicsInit& model,
const vle::devs::InitEventList& events) :
DifferentialEquation(model,events)
{
beta = events.getDouble("beta");// = 0.9
gamma = events.getDouble("gamma"); //= 0.2
sigma = events.getDouble("sigma"); // = 0.5
nu = events.getDouble("nu");// = 0.0
S.init(this, "S", events);
E.init(this, "E", events);
I.init(this, "I", events);
R.init(this, "R", events);
n = S()+E()+I()+R();
}
XRay::XRay(const vd::DynamicsInit& init, const vd::InitEventList& events)
: vd::Dynamics(init, events)
{
mProbabilityRightSR = vv::toDouble(events.get("probabilityRightSR"));
mProbabilityRightI = vv::toDouble(events.get("probabilityRightI"));
mObservationTimeStep = vv::toDouble(events.get("timeStep"));
if (events.exist("R_INIT") and
(vv::toBoolean(events.get("R_INIT")))) {
mNbModel =vv::toInteger(events.get("graphInfo_number"));
mPrefix =vv::toString(events.get("graphInfo_prefix"));
} else {
mNbModel = events.getMap("graphInfo").getInt("number");
mPrefix = events.getMap("graphInfo").getString("prefix");
}
mSampleSize = /*boost::lexical_cast<int>*/ (vv::toDouble(events.get("echProp")) * mNbModel);
//std::cout<<"smplesize= "<<mSampleSize<<"\n";
mPrevalence=0.; mIncidence=0.;
}
LogEx(const vle::devs::DynamicsInit& init, const vle::devs::InitEventList& events)
: DiscreteTimeDyn(init, events)
{
x.init(this, "x",events);
y.init(this, "y",events);
y_noise.init(this, "y_noise",events);
y.init_value(x());
y_noise.init_value(x());
mrand.seed(events.getInt("seed"));
}
Im(const vle::devs::DynamicsInit& model,
const vle::devs::InitEventList& events) :
ved::DifferentialEquation(model,events)
{
gamma = events.getDouble("gamma"); //= 0.2
sigma = events.getDouble("sigma"); // = 0.5
I = createVar("I");
E = createExt("E");
}
Im(const vle::devs::DynamicsInit& model,
const vle::devs::InitEventList& events) :
DifferentialEquation(model,events)
{
gamma = events.getDouble("gamma"); //= 0.2
sigma = events.getDouble("sigma"); // = 0.5
I.init(this, "I", events);
E.init(this, "E", events);
}
void use_regular_graph_generator(const vle::devs::InitEventList& events)
{
int dimension = events.getInt("graph-dimension");
if (dimension == 1)
use_1d_regular_graph_generator(events);
else if (dimension == 2)
use_2d_regular_graph_generator(events);
else
throw vle::utils::ModellingError(
"Undefined regular graph with %d dimension", dimension);
}
Y(
const vd::DynamicsInit& init,
const vd::InitEventList& events)
: ve::DifferentialEquation(init, events)
{
X = createVar("X");
maturing = createVar("maturing");
masse = createVar("masse");
if (events.exist("KS"))
KS = events.getDouble("KS");
else
throw vle::utils::ModellingError("Parameter KS not found");
if (events.exist("KG"))
KG = events.getDouble("KG");
else
throw vle::utils::ModellingError("Parameter KG not found");
}
void use_sortederdesrenyi_graph_generator(
const vle::devs::InitEventList& events)
{
vle::translator::graph_generator::parameter param{
std::bind(&Builder::graph_generator_make_model,
this,
std::placeholders::_1,
std::placeholders::_2,
std::placeholders::_3),
graph_generator_connectivity(),
directed
};
vle::translator::graph_generator gg(param);
gg.make_sorted_erdos_renyi(*this,
generator,
model_number,
events.getDouble("probability"),
events.getBoolean("allow-self-loops"));
}
void use_graph_generator(const vle::devs::InitEventList& events)
{
model_number = events.getInt("model-number");
std::string generator_name = events.getString("graph-generator");
if (events.exist("graph-seed"))
generator.seed(events.getInt("graph-seed"));
if (generator_name == "defined")
use_defined_graph_generator(events);
else if (generator_name == "small-world")
use_smallworld_graph_generator(events);
else if (generator_name == "scale-free")
use_scalefree_graph_generator(events);
else if (generator_name == "sorted-erdos-renyi")
use_sortederdesrenyi_graph_generator(events);
else if (generator_name == "erdos_renyi")
use_erdosrenyi_graph_generator(events);
else
throw vle::utils::ModellingError("Unknown graph gererator: %s",
generator_name.c_str());
}
Smartgardener(
const vd::DynamicsInit& init,
const vd::InitEventList& evts)
: vmd::Agent(init, evts),
plantlouse_population(0),
ladybird_population(0),
treatment_effect_on_plantlouse(0),
treatment_effect_on_ladybird(0),
plantlouse_max_population(1000),
ladybird_min_population(-1000)
{
treatment_effect_on_plantlouse =
evts.getDouble("treatment_effect_on_plantlouse");
treatment_effect_on_ladybird =
evts.getDouble("treatment_effect_on_ladybird");
plantlouse_max_population =
evts.getDouble("plantlouse_max_population");
ladybird_min_population =
evts.getDouble("ladybird_min_population");
addPredicates(this) +=
P("TwoManyPlantlouse", &Smartgardener::TwoManyPlantlouse),
P("NotToSmallLadybirdPopulation",
&Smartgardener::NotToSmallLadybirdPopulation);
addFacts(this) +=
F("x", &Smartgardener::x),
F("y", &Smartgardener::y);
addOutputFunctions(this) +=
O("treat", &Smartgardener::treat);
vle::utils::Package pack(context(), "vle.examples");
std::string filePath = pack.getDataFile("Smartgardener.txt");
std::ifstream fileStream(filePath.c_str());
KnowledgeBase::plan().fill(fileStream);
}
void use_2d_regular_graph_generator(const vle::devs::InitEventList& events)
{
vle::translator::regular_graph_generator::parameter param{
std::bind(&Builder::regular_graph_generator_make_model,
this,
std::placeholders::_1,
std::placeholders::_2,
std::placeholders::_3),
regular_graph_generator_connectivity()
};
vle::translator::regular_graph_generator rgg(param);
int width_mask = events.getInt("mask-width");
int height_mask = events.getInt("mask-height");
vle::utils::Array<std::string> mask(width_mask, height_mask);
const auto& v = events.getSet("mask").value();
{
if (vle::utils::numeric_cast<int>(mask.size()) !=
width_mask * height_mask)
throw vle::utils::ModellingError("mask definition error");
int i = 0, j = 0;
for (const auto& str : v) {
mask(i, j) = str->toString().value();
++j;
if (j >= height_mask) {
i++;
j = 0;
}
}
}
rgg.make_2d(*this,
{ { events.getInt("width"), events.getInt("height") } },
{ { events.getBoolean("wrap-width"),
events.getBoolean("wrap-height") } },
mask,
events.getInt("x-mask"),
events.getInt("y-mask"));
}
CompareDateAI(const vle::devs::ExecutiveInit &init,
const vle::devs::InitEventList &evts)
: vle::devs::Executive(init, evts)
{
vle::utils::Package package("safihr.cropmodel");
initialize_date(package.getDataFile(evts.getString("filename")));
std::sort(date.begin(), date.end(),
[] (const data& lhs,
const data& rhs)
{
return lhs.dmin < rhs.dmin;
});
DTraceModel(vle::fmt("AI need to build: %1% models") % date.size());
DTraceModel(vle::fmt("Table: %1%") % date);
}
Builder(const vle::devs::ExecutiveInit& init,
const vle::devs::InitEventList& events)
: vle::devs::Executive(init, events)
{
model_prefix = events.getString("model-prefix");
model_classname = events.getString("model-class");
condition_name = events.getString("node-condition");
graph_type = events.getString("graph-type");
graph_connectivity = events.getString("graph-connectiviy");
directed = events.getBoolean("graph-directed");
if (graph_type == "graph")
use_graph_generator(events);
else if (graph_type == "regular")
use_regular_graph_generator(events);
else
throw vle::utils::ModellingError("Unknown graph type %s",
graph_type.c_str());
}
AdaptativeQuantifier(const vd::DynamicsInit &init,
const vd::InitEventList &events)
: vd::Dynamics(init, events)
{
const auto& my_list = getModel().getOutputPortList();
if (not my_list.empty()) {
m_output_port_label = (my_list.begin())->first;
m_has_output_port = true;
}
if (my_list.size() > 1)
Trace(context(), 6, "Warning: multiple output ports."
" Will use only port %s\n", m_output_port_label.c_str());
m_adaptative = true;
if (events.end() != events.find("allow_offsets")) {
m_adaptative = vv::toBoolean(events.get("allow_offsets"));
}
if (m_adaptative) {
m_adapt_state = POSSIBLE;
} else {
m_adapt_state = IMPOSSIBLE;
}
m_zero_init_offset = false;
if (events.end() != events.find("zero_init_offset")) {
m_zero_init_offset = vv::toBoolean(events.get("zero_init_offset"));
}
if (events.end() != events.find("quantum")) {
m_step_size = vv::toDouble(events.get("quantum"));
} else {
Trace(context(), 6, "Warning : no quantum value provided for"
" Quantifier %s. Using default value (0.1)\n",
getModelName().c_str());
m_step_size = 0.1;
}
if (0 >= m_step_size)
throw vu::ModellingError("Bad quantum value (provided value : %f, "
"should be strictly positive)",
m_step_size);
if (events.end() != events.find("archive_length")) {
m_past_length = vv::toInteger(events.get("archive_length"));
} else {
m_past_length = 3;
}
if (2 >= m_past_length) {
throw vu::ModellingError("Bad archive length value ( provided value"
": %u, should at least 3)", m_past_length);
}
}
ActivityScheduler(const vle::devs::DynamicsInit& init,
const vle::devs::InitEventList& events) :
vle::devs::Dynamics(init, events),
mActivities(events.get("activities"))
{
}
ConstantGenerator(const vle::devs::DynamicsInit &init,
const vle::devs::InitEventList &events)
: vle::devs::Dynamics(init, events)
{
m_neighborhood = events.getInt("neighborhood");
}