// WARNING: SetCapacity can get called before Init()
void
nsMemoryCacheDevice::SetCapacity(PRInt32 capacity)
{
PRInt32 hardLimit = capacity * 1024; // convert k into bytes
PRInt32 softLimit = (hardLimit * 9) / 10;
AdjustMemoryLimits(softLimit, hardLimit);
}
// WARNING: SetCapacity can get called before Init()
void
nsMemoryCacheDevice::SetCapacity(int32_t capacity)
{
int32_t hardLimit = capacity * 1024; // convert k into bytes
int32_t softLimit = (hardLimit * 9) / 10;
AdjustMemoryLimits(softLimit, hardLimit);
}
//----------------------------------------------------------------------------------
bool TrKMclass::Process()
{
if(!initialized)
return false;
if(!AdjustMemoryLimits())
return false;
//w1.startTimer();
//// Create monitors
mm = new CMemoryMonitor(max_mem_size);
//bo = new CBinOrdering(n_bins);
//// Create queues
int n_splitters_read = 1;
pkmer = new CPartKMERQueue(max_mem_seqKMER); // wczytany plik z kmerami
// ---------------------------------- kmers -------------
//new -----------------
bin_kmers = new CBinKmers_all_new(n_splitters, kmer_len, num_kmer, max_mem_binsKMER);
w_splittersKMER.resize(n_splitters);
for(int i = 0; i < n_splitters; ++i)
{
w_splittersKMER[i] = new CWKmersSplitter_new(mm, pkmer, bin_kmers, kmer_len, prefix_len); //wstawianie kmerow do koszy
gr2.create_thread(boost::ref(*w_splittersKMER[i]));
}
w_kmers = new CWKmersReader(mm, data_file_name, kmers_buffer_size, pkmer, kmer_len, bin_kmers->fun_start_prefix());
gr1.create_thread(boost::ref(*w_kmers));
gr1.join_all(); // read kmers
gr2.join_all(); // split kmers
delete w_kmers;
for(int i = 0; i < n_splitters; ++i)
{
delete w_splittersKMER[i];
}
//w1.stopTimer();
cout << "\n";
//w2.startTimer();
SaveOutFile();
// ----------------------------------------------------
//delete pread;
delete pkmer;
delete bin_kmers;
//delete bpq;
//delete bd;
//delete bq;
//delete kq;
//w2.stopTimer();
return true;
}
