task autonomous()
{
StartTask(descore);
StartTask(velocitycalculator);
if(SensorValue[J1]) // blue
{
if(SensorValue[J2]) //normal
{
// RAM
ArmWall();
ForwardTillStop(127);
}
else // oppo
{
Gamma();
}
}
else // red
{
if(SensorValue[J2]) // normal
{
Beta();
}
else // oppo
{
Delta();
}
}
StopTask(velocitycalculator);
}
rowvec GridBdry::interp_normal(cube u) { //TODO
rowvec temp = zeros<rowvec>(Gamma.n_rows);
for(unsigned int i = 0; i < Gamma.n_rows; i++) {
temp(i) = u(Gamma(i, 0), Gamma(i, 1), 0)*n(i, 0) + u(Gamma(i, 0), Gamma(i, 1), 1)*n(i, 1);
}
return temp;
}
void ThreePhaseDecoder::makePhase() {
int n = width * height;
float i1, i2, i3;
for (int i = 0; i < n; i++) {
i1 = (float) graySequence[0][i];
i2 = (float) graySequence[1][i];
i3 = (float) graySequence[2][i];
#ifdef USE_GAMMA
i1 = Gamma(i1 / 255.0, gamma) * 255.0;
i2 = Gamma(i2 / 255.0, gamma) * 255.0;
i3 = Gamma(i3 / 255.0, gamma) * 255.0;
#endif
range[i] = findRange(i1, i2, i3);
mask[i] = range[i] <= rangeThreshold;
ready[i] = !mask[i];
reflectivity[i] = (byte) ((i1 + i2 + i3) / 3);
if(ready[i])
phase[i] = atan2f(sqrtf(3) * (i1 - i3), 2.f * i2 - i1 - i3) / (float) TWO_PI;
}
#ifdef LINEARIZE_PHASE
if(linearize) {
buildLut();
applyLut();
}
#endif
}
// ===========================================================
double Gamma(double u)
{
// Only for two particular cases:
// u = integer
// u = integer + 0.5
int cas;
double G;
int i;
int k;
k=(int)(u+0.5);
if(fabs(k-(int)u)<0.5) cas=1; else cas=2;
switch(cas)
{
case 1: // u integer
if(k==1) return 1;
G=1;
for(i=2;i<k;i++) G=G*i;
return G;
case 2: // u = k +1/2. We use the duplication formula
k=k-1;
G=sqrt(pi)*pow(2,1-2*k)*Gamma(2*k)/Gamma(k);
return G;
default:
ERROR("tools 79. In Gamma, u %f is neither inter nor half-integer");
}
}
/// Probabiliy density function for F distribution
/// The F distribution is the ratio of two chi-square distributions with degrees
/// of freedom N1 and N2, respectively, where each chi-square has first been
/// divided by its degrees of freedom.
/// An F-test (Snedecor and Cochran, 1983) is used to test if the standard
/// deviations of two populations are equal. This test can be a two-tailed test or
/// a one-tailed test.
/// The F hypothesis test is defined as:
/// H0: s1 = s2 (sN is sigma or std deviation)
/// Ha: s1 < s2 for a lower one tailed test
/// s1 > s2 for an upper one tailed test
/// s1 != s2 for a two tailed test
/// Test Statistic: F = s1^2/s2^2 where s1^2 and s2^2 are the sample variances.
/// The more this ratio deviates from 1, the stronger the evidence for unequal
/// population variances. Significance Level is alpha, a probability (0<=alpha<=1).
/// The hypothesis that the two standard deviations are equal is rejected if
/// F > PP(alpha,N1-1,N2-1) for an upper one-tailed test
/// F < PP(1-alpha,N1-1,N2-1) for a lower one-tailed test
/// F < PP(1-alpha/2,N1-1,N2-1) for a two-tailed test
/// F > PP(alpha/2,N1-1,N2-1)
/// where PP(alpha,k-1,N-1) is the percent point function of the F distribution
/// [PPfunc is inverse of the CDF : PP(alpha,N1,N2) == F where alpha=CDF(F,N1,N2)]
/// with N1 and N2 degrees of freedom and a significance level of alpha.
///
/// Ref http://www.itl.nist.gov/div898/handbook/ 1.3.6.6.5
/// @param x probability or significance level of the test, >=0 and < 1
/// @param n1 degrees of freedom of first sample, n1 > 0
/// @param n2 degrees of freedom of second sample, n2 > 0
/// @return the statistic (a ratio variance1/variance2) at this prob
double FDistPDF(double x, int n1, int n2) throw(Exception)
{
try {
double dn1(n1),dn2(n2);
double F = Gamma((dn1+dn2)/2.0) / (Gamma(dn1/2.0)*Gamma(dn2/2.0));
F *= ::pow(dn1/dn2,dn1/2.0) * ::pow(x,dn1/2.0 - 1.0);
F /= ::pow(1.0+x*dn1/dn2,(dn1+dn2)/2.0);
return F;
}
catch(Exception& e) { GPSTK_RETHROW(e); }
}
// Load B-V conversion parameters from config file
void StelSkyDrawer::initColorTableFromConfigFile(QSettings* conf)
{
std::map<float,Vec3f> color_map;
for (float bV=-0.5f;bV<=4.0f;bV+=0.01)
{
char entry[256];
sprintf(entry,"bv_color_%+5.2f",bV);
const QStringList s(conf->value(QString("stars/") + entry).toStringList());
if (!s.isEmpty())
{
Vec3f c;
if (s.size()==1)
c = StelUtils::strToVec3f(s[0]);
else
c =StelUtils::strToVec3f(s);
color_map[bV] = Gamma(eye->getDisplayGamma(),c);
}
}
if (color_map.size() > 1)
{
for (int i=0;i<128;i++)
{
const float bV = StelSkyDrawer::indexToBV(i);
std::map<float,Vec3f>::const_iterator greater(color_map.upper_bound(bV));
if (greater == color_map.begin())
{
colorTable[i] = greater->second;
}
else
{
std::map<float,Vec3f>::const_iterator less(greater);--less;
if (greater == color_map.end())
{
colorTable[i] = less->second;
}
else
{
colorTable[i] = Gamma(1.f/eye->getDisplayGamma(), ((bV-less->first)*greater->second + (greater->first-bV)*less->second) *(1.f/(greater->first-less->first)));
}
}
}
}
// QString res;
// for (int i=0;i<128;i++)
// {
// res += QString("Vec3f(%1,%2,%3),\n").arg(colorTable[i][0], 0, 'g', 6).arg(colorTable[i][1], 0, 'g', 6).arg(colorTable[i][2], 0, 'g', 6);
// }
// qDebug() << res;
}
double besselpoly(double a, double lambda, double nu) {
int m, factor=0;
double Sm, relerr, Sol;
double sum=0.0;
/* Special handling for a = 0.0 */
if (a == 0.0) {
if (nu == 0.0) return 1.0/(lambda + 1);
else return 0.0;
}
/* Special handling for negative and integer nu */
if ((nu < 0) && (floor(nu)==nu)) {
nu = -nu;
factor = ((int) nu) % 2;
}
Sm = exp(nu*log(a))/(/*cephes_*/Gamma(nu+1)*(lambda+nu+1));
m = 0;
do {
sum += Sm;
Sol = Sm;
Sm *= -a*a*(lambda+nu+1+2*m)/((nu+m+1)*(m+1)*(lambda+nu+1+2*m+2));
m++;
relerr = fabs((Sm-Sol)/Sm);
} while (relerr > EPS && m < 1000);
if (!factor)
return sum;
else
return -sum;
}
void MR::calcMagnetizations() {
for( size_t i = 0; i < G.nrNodes(); i++ ) {
if( props.updates == Properties::UpdateType::FULL ) {
// find indices in nb(i)
sub_nb _nbi( G.nb(i).size() );
_nbi.set();
// calc numerator1 and denominator1
Real sum_even, sum_odd;
sum_subs(i, _nbi, &sum_even, &sum_odd);
Mag[i] = (tanh(theta[i]) * sum_even + sum_odd) / (sum_even + tanh(theta[i]) * sum_odd);
} else if( props.updates == Properties::UpdateType::LINEAR ) {
sub_nb empty( G.nb(i).size() );
Mag[i] = T(i,empty);
for( size_t _l1 = 0; _l1 < G.nb(i).size(); _l1++ )
for( size_t _l2 = _l1 + 1; _l2 < G.nb(i).size(); _l2++ )
Mag[i] += Gamma(i,_l1,_l2) * tJ[i][_l1] * tJ[i][_l2] * cors[i][_l1][_l2];
}
if( abs( Mag[i] ) > 1.0 )
Mag[i] = (Mag[i] > 0.0) ? 1.0 : -1.0;
}
}
double rf_gauss (double d2, const double *a)
{ /* --- (general.) Gaussian function */
double ma; /* temporary buffer for m/a */
if (d2 < 0) { /* if to the get normalization factor */
if (a[0] <= 0) return 0; /* check whether the integral exists */
if (a[0] == 2) /* use simplified formula for a = 2 */
return pow(2*M_PI, 0.5*d2);
ma = -d2 /a[0];
d2 *= -0.5; /* m/a and m/2 (m = number of dims.) */
return (a[0] *Gamma(d2)) / (pow(2, ma+1) *pow(M_PI, d2) *Gamma(ma));
} /* return the normalization factor */
if (a[0] != 2) /* raise distance to the given power */
d2 = pow(d2, 0.5*a[0]); /* (note that d2 is already squared) */
return exp(-0.5 *d2); /* compute Gaussian function */
} /* rf_gauss() */
//__________________________________________________________________________________
_PMathObj _Constant::IGamma (_PMathObj arg)
{
if (arg->ObjectClass()!=NUMBER) {
_String errMsg ("A non-numerical argument passed to IGamma(a,x)");
WarnError (errMsg);
return new _Constant (0.0);
}
_Parameter x = ((_Constant*)arg)->theValue, sum=0.0;
if (x>1e25) {
x=1e25;
} else if (x<0) {
_String errMsg ("The domain of x is {x>0} for IGamma (a,x)");
WarnError (errMsg);
return new _Constant (0.0);
} else if (x==0.0) {
return new _Constant (0.0);
}
if (x<=theValue+1) // use the series representation
// IGamma (a,x)=exp(-x) x^a \sum_{n=0}^{\infty} \frac{\Gamma((a)}{\Gamma(a+1+n)} x^n
{
_Parameter term = 1.0/theValue, den = theValue+1;
long count = 0;
while ((fabs(term)>=fabs(sum)*machineEps)&&(count<500)) {
sum+=term;
term*=x/den;
den += 1.0;
count++;
}
} else // use the continue fraction representation
// IGamma (a,x)=exp(-x) x^a 1/x+/1-a/1+/1/x+/2-a/1+/2/x+...
{
_Parameter lastTerm = 0, a0 = 1.0, a1 = x, b0 = 0.0, b1 = 1.0, factor = 1.0, an, ana, anf;
for (long count = 1; count<500; count++) {
an = count;
ana = an - theValue;
a0 = (a1+a0*ana)*factor;
b0 = (b1+b0*ana)*factor;
anf = an*factor;
a1 = x*a0+anf*a1;
b1 = x*b0+anf*b1;
if (a1!=0.0) {
factor=1.0/a1;
sum = b1*factor;
if (fabs(sum-lastTerm)/sum<machineEps) {
break;
}
lastTerm = sum;
}
}
}
_Constant *result = (_Constant*)Gamma();
result->SetValue(sum*exp(-x+theValue*log(x))/result->theValue);
if (x>theValue+1) {
result->SetValue (1.0-result->theValue);
}
return result;
}
tmp<fvMatrix<Type> >
laplacian
(
GeometricField<Type, fvPatchField, volMesh>& vf
)
{
surfaceScalarField Gamma
(
IOobject
(
"1",
vf.time().constant(),
vf.mesh(),
IOobject::NO_READ
),
vf.mesh(),
dimensionedScalar("1", dimless, 1.0)
);
return fvm::laplacian
(
Gamma,
vf,
"laplacian(" + vf.name() + ')'
);
}
void FinalKick(particle_t *SPH, double dt){
#pragma omp parallel for
for(int i = 0 ; i < N_SPHP ; ++ i){
SPH[i].v = SPH[i].v_h + 0.5 * dt * SPH[i].a ;
SPH[i].u = SPH[i].u_h + 0.5 * dt * SPH[i].u_dot;
SPH[i].Y = SPH[i].Y_h + 0.5 * dt * SPH[i].m * (Gamma(SPH[i].rho, SPH[i].u, SPH[i].p_smth) - 1.0) * SPH[i].u_dot;
}
}
/*
void TimeEvolve(particle_t *SPH, double dt){
#pragma omp parallel for
for(int i = 0 ; i < N_SPHP ; ++ i){
SPH[i].r += SPH[i].v * dt + 0.5 * SPH[i].a * dt * dt;
SPH[i].v += SPH[i].a * dt;
SPH[i].u += SPH[i].u_dot * dt;
SPH[i].rho += - SPH[i].rho * SPH[i].div_v * dt;
SPH[i].h += SPH[i].h * SPH[i].div_v * dt;
}
}
*/
void InitialKick(particle_t *SPH, double dt){
#pragma omp parallel for
for(int i = 0 ; i < N_SPHP ; ++ i){
SPH[i].v_h = SPH[i].v + 0.5 * dt * SPH[i].a ;
SPH[i].u_h = SPH[i].u + 0.5 * dt * SPH[i].u_dot;//Gammaにsmoothed pを送るのはすごく重要。
SPH[i].Y_h = SPH[i].Y + 0.5 * dt * SPH[i].m * (Gamma(SPH[i].rho, SPH[i].u, SPH[i].p_smth) - 1.0) * SPH[i].u_dot;
}
}
void Predict(particle_t *SPH, double dt){
#pragma omp parallel for
for(int i = 0 ; i < N_SPHP ; ++ i){
SPH[i].v += dt * SPH[i].a ;
SPH[i].u += dt * SPH[i].u_dot;
SPH[i].Y += dt * SPH[i].m * (Gamma(SPH[i].rho, SPH[i].u, SPH[i].p_smth) - 1.0) * SPH[i].u_dot;
}
}
/* Returns a sample from Dirichlet(n,a) where n is dimensionality */
int Dirichlet(RndState *S, long n, double *a, double *x)
{
long i;
double tot=0, z;
for (i=0; i<n; i++) { z=Gamma(S,a[i]); tot+=z; x[i]=z; }
for (i=0; i<n; i++) { x[i]/=tot; }
return 1;
}
Module::ReturnType FeasibleUpwardPlanarSubgraph::call(
const Graph &G,
GraphCopy &FUPS,
adjEntry &extFaceHandle,
List<edge> &delEdges,
bool multisources)
{
FUPS = GraphCopy(G);
delEdges.clear();
node s_orig;
hasSingleSource(G, s_orig);
List<edge> nonTreeEdges_orig;
getSpanTree(FUPS, nonTreeEdges_orig, true, multisources);
CombinatorialEmbedding Gamma(FUPS);
nonTreeEdges_orig.permute(); // random order
//insert nonTreeEdges
while (!nonTreeEdges_orig.empty()) {
// make identical copy GC of Fups
//and insert e_orig in GC
GraphCopy GC = FUPS;
edge e_orig = nonTreeEdges_orig.popFrontRet();
//node a = GC.copy(e_orig->source());
//node b = GC.copy(e_orig->target());
GC.newEdge(e_orig);
if (UpwardPlanarity::upwardPlanarEmbed_singleSource(GC)) { //upward embedded the fups and check feasibility
CombinatorialEmbedding Beta(GC);
//choose a arbitrary feasibel ext. face
FaceSinkGraph fsg(Beta, GC.copy(s_orig));
SList<face> ext_faces;
fsg.possibleExternalFaces(ext_faces);
OGDF_ASSERT(!ext_faces.empty());
Beta.setExternalFace(ext_faces.front());
GraphCopy M = GC; // use a identical copy of GC to constrcut the merge graph of GC
adjEntry extFaceHandle_cur = getAdjEntry(Beta, GC.copy(s_orig), Beta.externalFace());
adjEntry adj_orig = GC.original(extFaceHandle_cur->theEdge())->adjSource();
if (constructMergeGraph(M, adj_orig, nonTreeEdges_orig)) {
FUPS = GC;
extFaceHandle = FUPS.copy(GC.original(extFaceHandle_cur->theEdge()))->adjSource();
continue;
}
else {
//Beta is not feasible
delEdges.pushBack(e_orig);
}
}
else {
// not ok, GC is not feasible
delEdges.pushBack(e_orig);
}
}
return Module::retFeasible;
}
void Round (u32 const * const k,u32 * const a,u8 const RC1,u8 const RC2)
{
a[0] ^= RC1;
Theta(k,a);
a[0] ^= RC2;
Pi1(a);
Gamma(a);
Pi2(a);
} /* Round */
double p_gamma(double a,double x){
int na = floor(a-1.0);
double dna = (a-1.0) - na;
double e = exp(-x/na)*x;
double res = 1.0;
for(int i=1;i<=na;i++){ res *= e/i; }
res *= exp(-dna)*pow(x,dna)/Gamma(dna);
return res;
}
/// Probability density function (PDF) of the Chi-square distribution.
/// The chi-square distribution results when n independent variables with
/// standard normal distributions are squared and summed; x=RSS(variables).
///
/// A chi-square test (Snedecor and Cochran, 1983) can be used to test if the
/// standard deviation of a population is equal to a specified value. This test
/// can be either a two-sided test or a one-sided test. The two-sided version
/// tests against the alternative that the true standard deviation is either
/// less than or greater than the specified value. The one-sided version only
/// tests in one direction.
/// The chi-square hypothesis test is defined as:
/// H0: sigma = sigma0
/// Ha: sigma < sigma0 for a lower one-tailed test
/// sigma > sigma0 for an upper one-tailed test
/// sigma <>sigma0 for a two-tailed test
/// Test Statistic: T = T = (N-1)*(s/sigma0)**2
/// where N is the sample size and s is the sample standard deviation.
/// The key element of this formula is the ratio s/sigma0 which compares the ratio
/// of the sample standard deviation to the target standard deviation. As this
/// ratio deviates from 1, the more likely is rejection of the null hypothesis.
/// Significance Level: alpha.
/// Critical Region: Reject the null hypothesis that the standard deviation
/// is a specified value, sigma0, if
/// T > chisquare(alpha,N-1) for an upper one-tailed alternative
/// T < chisquare(1-alpha,N-1) for a lower one-tailed alternative
/// T < chisquare(1-alpha,N-1) for a two-tailed test or
/// T < chisquare(1-alpha,N-1)
/// where chi-square(p,N-1) is the critical value or inverseCDF of the chi-square
/// distribution with N-1 degrees of freedom.
///
/// @param x input statistic, equal to an RSS(); x >= 0
/// @param n input value for number of degrees of freedom, n > 0
/// @return probability Chi-square probability (xsq,n)
double ChisqPDF(const double& x, const int& n) throw(Exception)
{
if(x < 0) GPSTK_THROW(Exception("Negative statistic"));
if(n <= 0)
GPSTK_THROW(Exception("Non-positive degrees of freedom"));
try {
double dn(double(n)/2.0);
return ( ::exp(-x/2.0) * ::pow(x,dn-1.0) / (::pow(2.0,dn) * Gamma(dn)) );
}
catch(Exception& e) { GPSTK_RETHROW(e); }
}
/*==================================================================================*/
void Round (u32 const * const k,u32 * const a,u8 const RC1,u8 const RC2)
/*----------------------------------------------------------------------------------*/
/* The round function, common to both encryption and decryption
/* - Round constants is added to the rightmost byte of the leftmost 32-bit word (=a0)
/*==================================================================================*/
{
a[0] ^= RC1;
Theta(k,a);
a[0] ^= RC2;
Pi1(a);
Gamma(a);
Pi2(a);
} /* Round */
void SemiImplicitDiffusionAlgorithm::computeDiffusivity()
{
double c1(0.), c2(0.);
for (unsigned int i(1); i<m_Nx; ++i)
{
for (unsigned int j(1); j<m_Ny; ++j)
{
c1 = m_H->Staggered(i, j);
c2 = staggeredGradSurfNorm(i, j, m_H);
D(i, j) = (Gamma()*c1 + rhogn()*Sl(i, j)) * pow(c1, n() + 1)*pow(c2, n() - 1);
}
}
}
int main() {
double v;
scanf("%lf", &v);
if (v < 0 || v > 10) {
printf("%f is not valid input.\n", v);
exit(1);
}
if (fmod(v, 1.0) < 1e-8) {
printf("%d\n", fact(v));
} else {
printf("%.8f\n", Gamma(v));
}
}
long Poisson(RndState *S, double lambda)
{
long r;
if (lambda>=15) {
double m=floor(lambda*7/8);
double x=Gamma(S,m);
if (x>lambda) r=Binomial(S,lambda/x,m-1);
else r=m+Poisson(S,lambda-x);
} else {
double p, elambda = exp(-lambda);
for (p=1, r=-1; p>elambda; p*=Uniform(S)) r++;
}
return r;
}
int main (int argc, char *argv[])
{ /* --- main function */
double x; /* argument */
if (argc != 2) { /* if wrong number of arguments given */
printf("usage: %s x\n", argv[0]);
printf("compute (logarithm of) Gamma function\n");
return 0; /* print a usage message */
} /* and abort the program */
x = atof(argv[1]); /* get argument */
if (x <= 0) { printf("%s: x must be > 0\n", argv[0]); return -1; }
printf(" Gamma(%.16g) = % .20g\n", x, Gamma(x));
printf("ln(Gamma(%.16g)) = % .20g\n", x, logGamma(x));
return 0; /* compute and print Gamma function */
} /* main() */
double Gamma(double x)
{
double pi=3.14159265;
if( x==0.5 ) return sqrt(pi);
if( x== 1 ) return 1.;
if( x==1.5 ) return sqrt(pi)/2.;
if( x==2. ) return 1.;
if( x==2.5 ) return 3*sqrt(pi)/4.;
if( x==3 ) return 2.;
if( x==3.5 ) return 15*sqrt(pi)/8.;
if( x==4 ) return 6.;
if( x > 3 ) return((x-1)*Gamma(x-1));
// impact::LOGGER_WRITE_ALONE(impact::msLogger::FATAL, "Pb with the Gamma function, integer or half integer positive number must be providen"
// , "double Gamma(double x)");
return -1;
}
double LogGamma
(
double x // x must be positive
)
{
if (x <= 0.0)
{
std::stringstream os;
os << "Invalid input argument " << x << ". Argument must be positive.";
throw std::invalid_argument( os.str() );
}
if (x < 12.0)
{
return log(fabs(Gamma(x)));
}
// Abramowitz and Stegun 6.1.41
// Asymptotic series should be good to at least 11 or 12 figures
// For error analysis, see Whittiker and Watson
// A Course in Modern Analysis (1927), page 252
static const double c[8] =
{
1.0/12.0,
-1.0/360.0,
1.0/1260.0,
-1.0/1680.0,
1.0/1188.0,
-691.0/360360.0,
1.0/156.0,
-3617.0/122400.0
};
double z = 1.0/(x*x);
double sum = c[7];
for (int i=6; i >= 0; i--)
{
sum *= z;
sum += c[i];
}
double series = sum/x;
static const double halfLogTwoPi = 0.91893853320467274178032973640562;
double logGamma = (x - 0.5)*log(x) - x + halfLogTwoPi + series;
return logGamma;
}
int main(int argc, char* argv[ ]) {
double v, w, x, y, z;
double timer = omp_get_wtime();
int thread_count = 1;
if (argc>1)
thread_count = strtol(argv[1], NULL, 10);
# pragma omp parallel num_threads(thread_count)
{
# pragma omp sections
{
# pragma omp section
{
v = Alpha( );
printf("v = %lf\n", v);
}
# pragma omp section
{
w = Beta( );
printf("w = %lf\n", w);
}
}
# pragma omp sections
{
# pragma omp section
{
x = Gamma(v, w);
printf("x = %lf\n", x);
}
# pragma omp section
{
y = Delta( );
printf("y = %lf\n", y);
}
}
}
z = Epsilon(x, y);
printf("z = %lf\n", z);
timer = omp_get_wtime() - timer;
printf("timer = %lf\n", timer);
return 0;
}
SimplePropertySet<string, double> propertylist()
{
SimplePropertySet<string, double> result;
result.add (Property<string, double> ("Option Value", Price() ) );
result.add (Property<string, double> ("Delta",Delta() ) );
result.add (Property<string, double> ("Gamma",Gamma() ) );
result.add (Property<string, double> ("Vega",Vega() ) );
result.add (Property<string, double> ("Vega",Theta() ) );
result.add (Property<string, double> ("Rho",Rho() ) );
result.add (Property<string, double> ("Cost of Carry",Coc() ) ); // Cost of carry
cout << "counbt " << result.Count();
return result;
}
double rf_cauchy (double d2, const double *a)
{ /* --- (generalized) Cauchy function */
double ma; /* temporary buffer for m/a */
assert(a); /* check the function arguments */
if (d2 < 0) { /* if to the get normalization factor */
if ((a[0] <= -d2) || (a[1] <= 0))
return 0; /* check whether the integral exists */
ma = -d2 /a[0];
d2 *= -0.5; /* m/a and m/2 (m = number of dims.) */
return (a[0] *Gamma(d2) *sin(ma *M_PI))
/ (2 *pow(M_PI, d2+1) *pow(a[1], ma-1));
} /* return the normalization factor */
if (a[0] != 2) /* raise distance to the given power */
d2 = pow(d2, 0.5*a[0]); /* (note that d2 is already squared) */
d2 += a[1]; /* add offset to distance */
return (d2 > MINDENOM) ? 1/d2 : 1/MINDENOM;
} /* rf_cauchy() */ /* compute Cauchy function */
int getCellScore (ProcessData * pData, ScoringData * sData, WavesData * wData, MOATypeShape * cellIndex, MOATypeElmVal * score, int * inSearchSpace, int NeighborSearch, MOATypeInd NeighbIndex) {
int ret = 0;
MOATypeDimn k;
MOATypeInd NeighbFlatIndex;
/*Check if cellIndex is found in the current scoring partition*/
if ((NeighborSearch == 1) && (IsCellInPart(cellIndex, sData->p_index, sData->seqNum, sData->seqLen, pData->partitionSize) == 0) &&
(getLocalIndex (cellIndex, sData->p_index, sData->seqNum, sData->seqLen, pData->partitionSize, &sData->neighbor) == 0)) {
NeighbFlatIndex = Gamma(sData->neighbor, sData->msaAlgn->dimn, sData->msaAlgn->shape, sData->msaAlgn->dimn, 1);
(*score) = sData->msaAlgn->elements[NeighbFlatIndex].val;
if (sData->msaAlgn->elements[NeighbFlatIndex].prev != NULL && sData->msaAlgn->elements[NeighbFlatIndex].prev_ub > 0 &&
sData->NghbMOA != NULL && NeighbIndex >= 0 && NeighbIndex < sData->NghbMOA->elements_ub) {
sData->NghbMOA->elements[NeighbIndex].prev = mmalloc(sizeof *sData->NghbMOA->elements[NeighbIndex].prev);
sData->NghbMOA->elements[NeighbIndex].prev_ub = 1;
sData->NghbMOA->elements[NeighbIndex].prev[0] = mmalloc(sData->seqNum * sizeof *sData->NghbMOA->elements[NeighbIndex].prev[0]);
for (k=0;k<sData->seqNum;k++)
sData->NghbMOA->elements[NeighbIndex].prev[0][k] = sData->msaAlgn->elements[NeighbFlatIndex].prev[0][k];
}
}
else {
/*check if neighbor's partition is included in search space*/
MOATypeShape * partIndex = mmalloc (pData->seqNum * sizeof *partIndex);
if (getPartitionIndex (cellIndex, pData->seqNum, pData->seqLen, wData->partitionSize, &partIndex) == 0) {
if ((*inSearchSpace) = isPartInSearchSpace(partIndex, wData) == 0) {
long waveNo, partNo;
getPartitionPosition (wData, partIndex, &waveNo, &partNo);
if (partNo >= 0) {
if (myProcid == getProcID (wData, waveNo, partNo)) {
/*Check if Neighbor is found in other local partitions OCout Buffer*/
if(checkPrevPartitions(pData, cellIndex, score) != 0) {
/*average the neighboring (up to 2 strides) cell scores*/
(*score) = averageNeighborsScore(pData, sData, wData, cellIndex);
}
}
/*Check if Neighbor is already received from other processors in OCin Buffer*/
else if (checkRecvOC(pData, wData, cellIndex, score, 0) != 0)
ret = -1;
}
}
}
free (partIndex);
}
return ret;
}
