void
hypre_F90_IFACE(hypre_structvectorprint, HYPRE_STRUCTVECTORPRINT)
(
hypre_F90_Obj *vector,
hypre_F90_Int *all,
hypre_F90_Int *ierr )
{
*ierr = (hypre_F90_Int)
( HYPRE_StructVectorPrint(
"HYPRE_StructVector.out",
hypre_F90_PassObj (HYPRE_StructVector, vector),
hypre_F90_PassInt (all)) );
}
double *solve(double *Ab, int solver_id, struct parms parms)
{
int i, j;
double final_res_norm;
int time_index, n_pre, n_post, num_iterations;
n_pre = 1; n_post = 1;
double *A_val, *b_val;
A_val = (double *) calloc(parms.N*parms.nsten, sizeof(double));
b_val = (double *) calloc(parms.N, sizeof(double));
for (i = 0; i < (parms.N*parms.nsten); i++){
A_val[i] = Ab[i];
}
for (i = 0; i < parms.N; i++){
b_val[i] = Ab[i+parms.N*parms.nsten];
}
// HYPRE //
HYPRE_StructGrid grid;
HYPRE_StructStencil stencil;
HYPRE_StructMatrix A;
HYPRE_StructVector b;
HYPRE_StructVector x;
HYPRE_StructSolver solver;
HYPRE_StructSolver precond;
#if Dim == 2
HYPRE_Int ilower[2] = {parms.x0, parms.y0};
HYPRE_Int iupper[2] = {parms.x1, parms.y1};
#endif
#if Dim == 3
HYPRE_Int ilower[3] = {parms.x0, parms.y0, 0};
HYPRE_Int iupper[3] = {parms.x1, parms.y1, parms.Nz-1};
#endif
{
// Create an empty 2D grid object
HYPRE_StructGridCreate(MPI_COMM_WORLD, Dim, &grid);
// Add a new box to the grid
HYPRE_StructGridSetExtents(grid, ilower, iupper);
// 1. Set up periodic boundary condition in y-direction and create the grid
int pset[3];
pset[0] = 0; pset[1] = parms.Ny; pset[2] = 0;
#if Dim == 3
pset[2] = parms.Nz;
#endif
//HYPRE_StructGridSetNumGhost(grid,pset)
HYPRE_StructGridSetPeriodic(grid, pset);
HYPRE_StructGridAssemble(grid);
}
// 2. Define the discretization stencil
{
if (Dim == 2){
// Create an empty 2D, 5-pt stencil object
HYPRE_StructStencilCreate(2, parms.nsten, &stencil);
// Define the geometry of the stencil
{
int offsets[5][2] = {{0,0}, {-1,0}, {0,-1}, {0,1}, {1,0}};
for (i = 0; i < parms.nsten; i++)
HYPRE_StructStencilSetElement(stencil, i, offsets[i]);
}
}
else
{
HYPRE_StructStencilCreate(3, parms.nsten, &stencil);
// Define the geometry of the 3D stencil
{
int offsets[7][3] = {{0,0,0}, {-1,0,0}, {0,-1,0}, {0,1,0}, {1,0,0}, {0,0,-1}, {0,0,1}};
for (i = 0; i < parms.nsten; i++)
HYPRE_StructStencilSetElement(stencil, i, offsets[i]);
}
}
}
// 3. Set up a Struct Matrix A from Aval
{
HYPRE_Int stencil_indices[parms.nsten];
// Create an empty matrix object
HYPRE_StructMatrixCreate(MPI_COMM_WORLD, grid, stencil, &A);
// Indicate that the matrix coefficients are ready to be set
HYPRE_StructMatrixInitialize(A);
for (j = 0; j < parms.nsten; j++)
stencil_indices[j] = j;
HYPRE_StructMatrixSetBoxValues(A, ilower, iupper, parms.nsten, stencil_indices, A_val);
free(A_val);
}
// 4. Set up Struct Vectors for b from b_val and set x = 0
{
double *values;
HYPRE_StructVectorCreate(MPI_COMM_WORLD, grid, &b);
HYPRE_StructVectorCreate(MPI_COMM_WORLD, grid, &x);
HYPRE_StructVectorInitialize(b);
HYPRE_StructVectorInitialize(x);
values = calloc((parms.N), sizeof(double));
for (i = 0; i < (parms.N); i++)
values[i] = 0.0;
HYPRE_StructVectorSetBoxValues(x, ilower, iupper, values);
HYPRE_StructVectorSetBoxValues(b, ilower, iupper, b_val);
free(b_val);
free(values);
}
//Finalize the vector and matrix assembly
HYPRE_StructMatrixAssemble(A);
HYPRE_StructVectorAssemble(b);
HYPRE_StructVectorAssemble(x);
#if DEBUG == 3
HYPRE_StructMatrixPrint("./poisson.matrix", A, 0);
HYPRE_StructVectorPrint("./poisson.rhs", b, 0);
/*char fname[64];
char Aname[64], bname[64];
sprintf(Aname,"data/A%d.",parms.cyc);
sprintf(bname,"data/b%d.",parms.cyc);
filename(fname, Aname, parms.wkdir, parms);
HYPRE_StructMatrixPrint(fname, A, 0);
filename(fname, bname, parms.wkdir, parms);
HYPRE_StructVectorPrint(fname, b, 0);*/
#endif
// 6. Set up and use a solver (SMG)
if (solver_id == 0)
{
time_index = hypre_InitializeTiming("SMG Setup");
hypre_BeginTiming(time_index);
HYPRE_StructSMGCreate(MPI_COMM_WORLD, &solver);
HYPRE_StructSMGSetMemoryUse(solver, 0);
HYPRE_StructSMGSetMaxIter(solver, 100);
HYPRE_StructSMGSetTol(solver, 1.0e-12);
HYPRE_StructSMGSetRelChange(solver, 0);
HYPRE_StructSMGSetNumPreRelax(solver, n_pre);
HYPRE_StructSMGSetNumPostRelax(solver, n_post);
// Logging must be on to get iterations and residual norm info below
HYPRE_StructSMGSetLogging(solver, 1);
// Setup and print setup timings
HYPRE_StructSMGSetup(solver, A, b, x);
hypre_EndTiming(time_index);
#if DEBUG == 3
hypre_PrintTiming("Setup phase times", MPI_COMM_WORLD);
#endif
hypre_FinalizeTiming(time_index);
hypre_ClearTiming();
// Solve and print solve timings
time_index = hypre_InitializeTiming("SMG Solve");
hypre_BeginTiming(time_index);
HYPRE_StructSMGSolve(solver, A, b, x);
hypre_EndTiming(time_index);
#if DEBUG == 3
hypre_PrintTiming("Solve phase times", MPI_COMM_WORLD);
#endif
hypre_FinalizeTiming(time_index);
hypre_ClearTiming();
// Get some info on the run
HYPRE_StructSMGGetNumIterations(solver, &num_iterations);
HYPRE_StructSMGGetFinalRelativeResidualNorm(solver, &final_res_norm);
#if DEBUG == 2
if (parms.rank == 0){
fprintf(stdout, "Number of Iterations = %4d ; Final Relative Residual Norm = %e\n\n", num_iterations, final_res_norm);
}
#endif
// Clean up
HYPRE_StructSMGDestroy(solver);
}
// 6. Set up and use a solver (PCG) with SMG Preconditioner
if (solver_id == 1)
{
HYPRE_StructPCGCreate(MPI_COMM_WORLD, &solver);
//HYPRE_StructPCGSetMemoryUse(solver, 0);
HYPRE_StructPCGSetMaxIter(solver, 100);
HYPRE_StructPCGSetTol(solver, 1.0e-12);
HYPRE_StructPCGSetTwoNorm(solver, 1);
HYPRE_StructPCGSetRelChange(solver, 0);
//HYPRE_StructPCGSetPrintLevel(solver, 2 ); /* print each CG iteration */
HYPRE_StructPCGSetLogging(solver, 1);
/* Use symmetric SMG as preconditioner */
HYPRE_StructSMGCreate(MPI_COMM_WORLD, &precond);
HYPRE_StructSMGSetMemoryUse(precond, 0);
HYPRE_StructSMGSetMaxIter(precond, 32);
HYPRE_StructSMGSetTol(precond, 0.0);
HYPRE_StructSMGSetZeroGuess(precond);
HYPRE_StructSMGSetNumPreRelax(precond, 1);
HYPRE_StructSMGSetNumPostRelax(precond, 1);
/* Set the preconditioner and solve */
HYPRE_StructPCGSetPrecond(solver, HYPRE_StructSMGSolve, HYPRE_StructSMGSetup, precond);
HYPRE_StructPCGSetup(solver, A, b, x);
HYPRE_StructPCGSolve(solver, A, b, x);
/* Get some info on the run */
HYPRE_StructPCGGetNumIterations(solver, &num_iterations);
HYPRE_StructPCGGetFinalRelativeResidualNorm(solver, &final_res_norm);
#if DEBUG == 2
if (parms.rank == 0){
fprintf(stdout, "Number of Iterations = %4d ; Final Relative Residual Norm = %e\n\n", num_iterations, final_res_norm);
}
#endif
/* Clean up */
HYPRE_StructSMGDestroy(precond);
HYPRE_StructPCGDestroy(solver);
}
// get the local solution
double *values = calloc(parms.N, sizeof(double));
HYPRE_StructVectorGetBoxValues(x, ilower, iupper, values);
// Free memory
HYPRE_StructGridDestroy(grid);
HYPRE_StructStencilDestroy(stencil);
HYPRE_StructMatrixDestroy(A);
HYPRE_StructVectorDestroy(b);
HYPRE_StructVectorDestroy(x);
free(Ab);
return(values);
}
hypre_int
main( hypre_int argc,
char *argv[] )
{
HYPRE_Int arg_index;
HYPRE_Int print_usage;
HYPRE_Int nx, ny, nz;
HYPRE_Int P, Q, R;
HYPRE_Int bx, by, bz;
HYPRE_StructGrid from_grid, to_grid;
HYPRE_StructVector from_vector, to_vector, check_vector;
HYPRE_CommPkg comm_pkg;
HYPRE_Int time_index;
HYPRE_Int num_procs, myid;
HYPRE_Int p, q, r;
HYPRE_Int dim;
HYPRE_Int nblocks ;
HYPRE_Int **ilower, **iupper, **iupper2;
HYPRE_Int istart[3];
HYPRE_Int i, ix, iy, iz, ib;
HYPRE_Int print_system = 0;
HYPRE_Real check;
/*-----------------------------------------------------------
* Initialize some stuff
*-----------------------------------------------------------*/
/* Initialize MPI */
hypre_MPI_Init(&argc, &argv);
hypre_MPI_Comm_size(hypre_MPI_COMM_WORLD, &num_procs );
hypre_MPI_Comm_rank(hypre_MPI_COMM_WORLD, &myid );
/*-----------------------------------------------------------
* Set defaults
*-----------------------------------------------------------*/
dim = 3;
nx = 2;
ny = 2;
nz = 2;
P = num_procs;
Q = 1;
R = 1;
bx = 1;
by = 1;
bz = 1;
istart[0] = 1;
istart[1] = 1;
istart[2] = 1;
/*-----------------------------------------------------------
* Parse command line
*-----------------------------------------------------------*/
print_usage = 0;
arg_index = 1;
while (arg_index < argc)
{
if ( strcmp(argv[arg_index], "-n") == 0 )
{
arg_index++;
nx = atoi(argv[arg_index++]);
ny = atoi(argv[arg_index++]);
nz = atoi(argv[arg_index++]);
}
else if ( strcmp(argv[arg_index], "-istart") == 0 )
{
arg_index++;
istart[0] = atoi(argv[arg_index++]);
istart[1] = atoi(argv[arg_index++]);
istart[2] = atoi(argv[arg_index++]);
}
else if ( strcmp(argv[arg_index], "-P") == 0 )
{
arg_index++;
P = atoi(argv[arg_index++]);
Q = atoi(argv[arg_index++]);
R = atoi(argv[arg_index++]);
}
else if ( strcmp(argv[arg_index], "-b") == 0 )
{
arg_index++;
bx = atoi(argv[arg_index++]);
by = atoi(argv[arg_index++]);
bz = atoi(argv[arg_index++]);
}
else if ( strcmp(argv[arg_index], "-d") == 0 )
{
arg_index++;
dim = atoi(argv[arg_index++]);
}
else if ( strcmp(argv[arg_index], "-print") == 0 )
{
arg_index++;
print_system = 1;
}
else if ( strcmp(argv[arg_index], "-help") == 0 )
{
print_usage = 1;
break;
}
else
{
arg_index++;
}
}
/*-----------------------------------------------------------
* Print usage info
*-----------------------------------------------------------*/
if ( (print_usage) && (myid == 0) )
{
hypre_printf("\n");
hypre_printf("Usage: %s [<options>]\n", argv[0]);
hypre_printf("\n");
hypre_printf(" -n <nx> <ny> <nz> : problem size per block\n");
hypre_printf(" -istart <ix> <iy> <iz> : start of box\n");
hypre_printf(" -P <Px> <Py> <Pz> : processor topology\n");
hypre_printf(" -b <bx> <by> <bz> : blocking per processor\n");
hypre_printf(" -d <dim> : problem dimension (2 or 3)\n");
hypre_printf(" -print : print vectors\n");
hypre_printf("\n");
}
if ( print_usage )
{
exit(1);
}
/*-----------------------------------------------------------
* Check a few things
*-----------------------------------------------------------*/
if ((P*Q*R) > num_procs)
{
if (myid == 0)
{
hypre_printf("Error: PxQxR is more than the number of processors\n");
}
exit(1);
}
else if ((P*Q*R) < num_procs)
{
if (myid == 0)
{
hypre_printf("Warning: PxQxR is less than the number of processors\n");
}
}
/*-----------------------------------------------------------
* Print driver parameters
*-----------------------------------------------------------*/
if (myid == 0)
{
hypre_printf("Running with these driver parameters:\n");
hypre_printf(" (nx, ny, nz) = (%d, %d, %d)\n", nx, ny, nz);
hypre_printf(" (ix, iy, iz) = (%d, %d, %d)\n",
istart[0],istart[1],istart[2]);
hypre_printf(" (Px, Py, Pz) = (%d, %d, %d)\n", P, Q, R);
hypre_printf(" (bx, by, bz) = (%d, %d, %d)\n", bx, by, bz);
hypre_printf(" dim = %d\n", dim);
}
/*-----------------------------------------------------------
* Set up the stencil structure (7 points) when matrix is NOT read from file
* Set up the grid structure used when NO files are read
*-----------------------------------------------------------*/
switch (dim)
{
case 1:
nblocks = bx;
p = myid % P;
break;
case 2:
nblocks = bx*by;
p = myid % P;
q = (( myid - p)/P) % Q;
break;
case 3:
nblocks = bx*by*bz;
p = myid % P;
q = (( myid - p)/P) % Q;
r = ( myid - p - P*q)/( P*Q );
break;
}
if (myid >= (P*Q*R))
{
/* My processor has no data on it */
nblocks = bx = by = bz = 0;
}
/*-----------------------------------------------------------
* prepare space for the extents
*-----------------------------------------------------------*/
ilower = hypre_CTAlloc(HYPRE_Int*, nblocks);
iupper = hypre_CTAlloc(HYPRE_Int*, nblocks);
iupper2 = hypre_CTAlloc(HYPRE_Int*, nblocks);
for (i = 0; i < nblocks; i++)
{
ilower[i] = hypre_CTAlloc(HYPRE_Int, dim);
iupper[i] = hypre_CTAlloc(HYPRE_Int, dim);
iupper2[i] = hypre_CTAlloc(HYPRE_Int, dim);
}
ib = 0;
switch (dim)
{
case 1:
for (ix = 0; ix < bx; ix++)
{
ilower[ib][0] = istart[0]+ nx*(bx*p+ix);
iupper[ib][0] = istart[0]+ nx*(bx*p+ix+1) - 1;
iupper2[ib][0] = iupper[ib][0];
if ( (ix == (bx-1)) && (p < (P-1)) )
iupper2[ib][0] = iupper[ib][0] + 1;
ib++;
}
break;
case 2:
for (iy = 0; iy < by; iy++)
for (ix = 0; ix < bx; ix++)
{
ilower[ib][0] = istart[0]+ nx*(bx*p+ix);
iupper[ib][0] = istart[0]+ nx*(bx*p+ix+1) - 1;
ilower[ib][1] = istart[1]+ ny*(by*q+iy);
iupper[ib][1] = istart[1]+ ny*(by*q+iy+1) - 1;
iupper2[ib][0] = iupper[ib][0];
iupper2[ib][1] = iupper[ib][1];
if ( (ix == (bx-1)) && (p < (P-1)) )
iupper2[ib][0] = iupper[ib][0] + 1;
if ( (iy == (by-1)) && (q < (Q-1)) )
iupper2[ib][1] = iupper[ib][1] + 1;
ib++;
}
break;
case 3:
for (iz = 0; iz < bz; iz++)
for (iy = 0; iy < by; iy++)
for (ix = 0; ix < bx; ix++)
{
ilower[ib][0] = istart[0]+ nx*(bx*p+ix);
iupper[ib][0] = istart[0]+ nx*(bx*p+ix+1) - 1;
ilower[ib][1] = istart[1]+ ny*(by*q+iy);
iupper[ib][1] = istart[1]+ ny*(by*q+iy+1) - 1;
ilower[ib][2] = istart[2]+ nz*(bz*r+iz);
iupper[ib][2] = istart[2]+ nz*(bz*r+iz+1) - 1;
iupper2[ib][0] = iupper[ib][0];
iupper2[ib][1] = iupper[ib][1];
iupper2[ib][2] = iupper[ib][2];
if ( (ix == (bx-1)) && (p < (P-1)) )
iupper2[ib][0] = iupper[ib][0] + 1;
if ( (iy == (by-1)) && (q < (Q-1)) )
iupper2[ib][1] = iupper[ib][1] + 1;
if ( (iz == (bz-1)) && (r < (R-1)) )
iupper2[ib][2] = iupper[ib][2] + 1;
ib++;
}
break;
}
HYPRE_StructGridCreate(hypre_MPI_COMM_WORLD, dim, &from_grid);
HYPRE_StructGridCreate(hypre_MPI_COMM_WORLD, dim, &to_grid);
for (ib = 0; ib < nblocks; ib++)
{
HYPRE_StructGridSetExtents(from_grid, ilower[ib], iupper[ib]);
HYPRE_StructGridSetExtents(to_grid, ilower[ib], iupper2[ib]);
}
HYPRE_StructGridAssemble(from_grid);
HYPRE_StructGridAssemble(to_grid);
/*-----------------------------------------------------------
* Set up the vectors
*-----------------------------------------------------------*/
HYPRE_StructVectorCreate(hypre_MPI_COMM_WORLD, from_grid, &from_vector);
HYPRE_StructVectorInitialize(from_vector);
AddValuesVector(from_grid, from_vector, 1.0);
HYPRE_StructVectorAssemble(from_vector);
HYPRE_StructVectorCreate(hypre_MPI_COMM_WORLD, to_grid, &to_vector);
HYPRE_StructVectorInitialize(to_vector);
AddValuesVector(to_grid, to_vector, 0.0);
HYPRE_StructVectorAssemble(to_vector);
/* Vector used to check the migration */
HYPRE_StructVectorCreate(hypre_MPI_COMM_WORLD, to_grid, &check_vector);
HYPRE_StructVectorInitialize(check_vector);
AddValuesVector(to_grid, check_vector, 1.0);
HYPRE_StructVectorAssemble(check_vector);
/*-----------------------------------------------------------
* Migrate
*-----------------------------------------------------------*/
time_index = hypre_InitializeTiming("Struct Migrate");
hypre_BeginTiming(time_index);
HYPRE_StructVectorGetMigrateCommPkg(from_vector, to_vector, &comm_pkg);
HYPRE_StructVectorMigrate(comm_pkg, from_vector, to_vector);
HYPRE_CommPkgDestroy(comm_pkg);
hypre_EndTiming(time_index);
hypre_PrintTiming("Struct Migrate", hypre_MPI_COMM_WORLD);
hypre_FinalizeTiming(time_index);
/*-----------------------------------------------------------
* Check the migration and print the result
*-----------------------------------------------------------*/
hypre_StructAxpy(-1.0, to_vector, check_vector);
check = hypre_StructInnerProd (check_vector, check_vector);
if (myid == 0)
{
printf("\nCheck = %1.0f (success = 0)\n\n", check);
}
/*-----------------------------------------------------------
* Print out the vectors
*-----------------------------------------------------------*/
if (print_system)
{
HYPRE_StructVectorPrint("struct_migrate.out.xfr", from_vector, 0);
HYPRE_StructVectorPrint("struct_migrate.out.xto", to_vector, 0);
}
/*-----------------------------------------------------------
* Finalize things
*-----------------------------------------------------------*/
HYPRE_StructGridDestroy(from_grid);
HYPRE_StructGridDestroy(to_grid);
for (i = 0; i < nblocks; i++)
{
hypre_TFree(ilower[i]);
hypre_TFree(iupper[i]);
hypre_TFree(iupper2[i]);
}
hypre_TFree(ilower);
hypre_TFree(iupper);
hypre_TFree(iupper2);
HYPRE_StructVectorDestroy(from_vector);
HYPRE_StructVectorDestroy(to_vector);
HYPRE_StructVectorDestroy(check_vector);
/* Finalize MPI */
hypre_MPI_Finalize();
return (0);
}
