Example #1
0
void myInitialAssignment_initTarget(
    myInitialAssignment *assign,
    mySpecies **species, unsigned int num_of_species,
    myParameter **parameters, unsigned int num_of_parameters,
    myCompartment **compartments, unsigned int num_of_compartments) {
  unsigned int i;
  InitialAssignment_t *origin;
  const char *origin_symbol;

  origin = myInitialAssignment_getOrigin(assign);
  origin_symbol = InitialAssignment_getSymbol(origin);

  for (i = 0; i < num_of_species; i++) {
    if (strcmp(origin_symbol, Species_getId(species[i]->origin)) == 0) {
      myInitialAssignment_setTargetSpecies(assign, species[i]);
      return;
    }
  }

  for (i = 0; i < num_of_parameters; i++) {
    if (strcmp(origin_symbol, Parameter_getId(parameters[i]->origin)) == 0) {
      myInitialAssignment_setTargetParameter(assign, parameters[i]);
      return;
    }
  }

  for (i = 0; i < num_of_compartments; i++) {
    if (strcmp(origin_symbol, Compartment_getId(compartments[i]->origin)) == 0) {
      myInitialAssignment_setTargetCompartment(assign, compartments[i]);
      return;
    }
  }
}
Example #2
0
void myInitialAssignment_initTargetSpeciesReference(
    myInitialAssignment *assign,
    myReaction **reactions, unsigned int num_of_reactions) {
  unsigned int i, j;
  InitialAssignment_t *origin;
  myReaction *re;
  mySpeciesReference *product, *reactant;
  const char *origin_symbol;

  origin = myInitialAssignment_getOrigin(assign);
  origin_symbol = InitialAssignment_getSymbol(origin);

  for (i = 0; i < num_of_reactions; i++) {
    re = reactions[i];

    for (j = 0; j < re->num_of_products; j++) {
      product = re->products[j];
      if (SpeciesReference_isSetId(product->origin)
          && strcmp(origin_symbol, SpeciesReference_getId(product->origin)) == 0) {
        myInitialAssignment_setTargetSpeciesReference(assign, product);
        return;
      }
    }

    for (j = 0; j < re->num_of_reactants; j++) {
      reactant = re->reactants[j];
      if (SpeciesReference_isSetId(reactant->origin)
          && strcmp(origin_symbol, SpeciesReference_getId(reactant->origin)) == 0) {
        myInitialAssignment_setTargetSpeciesReference(assign, reactant);
        return;
      }
    }
  }
}
END_TEST


START_TEST (test_InitialAssignment_setSymbol2)
{
  const char *id = "e1";
  int i = InitialAssignment_setSymbol(E, id);

  fail_unless( i == LIBSBML_OPERATION_SUCCESS );
  fail_unless( !strcmp(InitialAssignment_getSymbol(E), id) );
  fail_unless( InitialAssignment_isSetSymbol(E) );

  i = InitialAssignment_setSymbol(E, NULL);

  fail_unless( i == LIBSBML_OPERATION_SUCCESS );
  fail_unless( !InitialAssignment_isSetSymbol(E) );
}