/*
* Create the WormAnalysisDataStruct
* Initialize Memory Storage
* Set all Pointers to Null.
* Run CvCreate Sequence
*
* Note this does not allocate memory for images because the user may not know
* what size image is wanted yet.
*
* To do that use LoadWormColorOriginal()
*
*/
WormAnalysisData* CreateWormAnalysisDataStruct(){
WormAnalysisData* WormPtr;
WormPtr=(WormAnalysisData*) malloc(sizeof(WormAnalysisData));
/*** Set Everythingm To NULL ***/
WormPtr->Head=NULL;
WormPtr->Tail=NULL;
WormPtr->HeadIndex=0;
WormPtr->TailIndex=0;
WormPtr->ImgOrig =NULL;
WormPtr->ImgSmooth =NULL;
WormPtr->ImgThresh =NULL;
WormPtr->frameNum=0;
WormPtr->frameNumCamInternal=0;
WormPtr->SizeOfImage.height = 0;
WormPtr->SizeOfImage.width= 0;
WormPtr->timestamp=0;
/*** Initialze Worm Memory Storage***/
InitializeWormMemStorage(WormPtr);
/**** Allocate Memory for CvSeq ***/
WormPtr->Boundary=cvCreateSeq(CV_SEQ_ELTYPE_POINT,sizeof(CvSeq),sizeof(CvPoint),WormPtr->MemStorage);
WormPtr->Centerline=cvCreateSeq(CV_SEQ_ELTYPE_POINT,sizeof(CvSeq),sizeof(CvPoint),WormPtr->MemStorage);
/*** Create Segmented Worm Object ***/
WormPtr->Segmented= CreateSegmentedWormStruct();
/** Create Time Evolution Worm Object **/
WormPtr->TimeEvolution= CreateWormTimeEvolution();
/** Position on plate information **/
WormPtr->stageVelocity=cvPoint(0,0);
return WormPtr;
}
/*
* This function allocates images and frames
* And a Worm Object
*
* And a Parameter Object
* For internal manipulation
*
*
*/
void InitializeExperiment(Experiment* exp) {
/*** Create IplImage **/
IplImage* SubSampled = cvCreateImage(cvSize(NSIZEX / 2, NSIZEY / 2),
IPL_DEPTH_8U, 1);
IplImage* HUDS = cvCreateImage(cvSize(NSIZEX, NSIZEY), IPL_DEPTH_8U, 1);
exp->CurrentSelectedImg= cvCreateImage(cvSize(NSIZEX,NSIZEY), IPL_DEPTH_8U,1);
exp->SubSampled = SubSampled;
exp->HUDS = HUDS;
/*** Create Frames **/
Frame* fromCCD = CreateFrame(cvSize(NSIZEX, NSIZEY));
Frame* forDLP = CreateFrame(cvSize(NSIZEX, NSIZEY));
Frame* IlluminationFrame = CreateFrame(cvSize(NSIZEX, NSIZEY));
exp->fromCCD = fromCCD;
exp->forDLP = forDLP;
exp->IlluminationFrame = IlluminationFrame;
/** Create Worm Data Struct and Worm Parameter Struct **/
WormAnalysisData* Worm = CreateWormAnalysisDataStruct();
WormAnalysisParam* Params = CreateWormAnalysisParam();
InitializeEmptyWormImages(Worm, cvSize(NSIZEX, NSIZEY));
InitializeWormMemStorage(Worm);
/** Create SegWormDLP object using memory from the worm object **/
exp->segWormDLP = CreateSegmentedWormStruct();
exp->Worm = Worm;
exp->Params = Params;
/** Setup Previous Worm **/
WormGeom* PrevWorm = CreateWormGeom();
exp->PrevWorm = PrevWorm;
}
