Example #1
0
static PetscErrorCode PetscCommBuildTwoSided_Ibarrier(MPI_Comm comm,PetscMPIInt count,MPI_Datatype dtype,PetscMPIInt nto,const PetscMPIInt *toranks,const void *todata,PetscMPIInt *nfrom,PetscMPIInt **fromranks,void *fromdata)
{
  PetscErrorCode ierr;
  PetscMPIInt    nrecvs,tag,done,i;
  MPI_Aint       lb,unitbytes;
  char           *tdata;
  MPI_Request    *sendreqs,barrier;
  PetscSegBuffer segrank,segdata;

  PetscFunctionBegin;
  ierr = PetscCommDuplicate(comm,&comm,&tag);CHKERRQ(ierr);
  ierr = MPI_Type_get_extent(dtype,&lb,&unitbytes);CHKERRQ(ierr);
  if (lb != 0) SETERRQ1(comm,PETSC_ERR_SUP,"Datatype with nonzero lower bound %ld\n",(long)lb);
  tdata = (char*)todata;
  ierr  = PetscMalloc1(nto,&sendreqs);CHKERRQ(ierr);
  for (i=0; i<nto; i++) {
    ierr = MPI_Issend((void*)(tdata+count*unitbytes*i),count,dtype,toranks[i],tag,comm,sendreqs+i);CHKERRQ(ierr);
  }
  ierr = PetscSegBufferCreate(sizeof(PetscMPIInt),4,&segrank);CHKERRQ(ierr);
  ierr = PetscSegBufferCreate(unitbytes,4*count,&segdata);CHKERRQ(ierr);

  nrecvs  = 0;
  barrier = MPI_REQUEST_NULL;
  for (done=0; !done; ) {
    PetscMPIInt flag;
    MPI_Status  status;
    ierr = MPI_Iprobe(MPI_ANY_SOURCE,tag,comm,&flag,&status);CHKERRQ(ierr);
    if (flag) {                 /* incoming message */
      PetscMPIInt *recvrank;
      void        *buf;
      ierr      = PetscSegBufferGet(segrank,1,&recvrank);CHKERRQ(ierr);
      ierr      = PetscSegBufferGet(segdata,count,&buf);CHKERRQ(ierr);
      *recvrank = status.MPI_SOURCE;
      ierr      = MPI_Recv(buf,count,dtype,status.MPI_SOURCE,tag,comm,MPI_STATUS_IGNORE);CHKERRQ(ierr);
      nrecvs++;
    }
    if (barrier == MPI_REQUEST_NULL) {
      PetscMPIInt sent,nsends;
      ierr = PetscMPIIntCast(nto,&nsends);CHKERRQ(ierr);
      ierr = MPI_Testall(nsends,sendreqs,&sent,MPI_STATUSES_IGNORE);CHKERRQ(ierr);
      if (sent) {
#if defined(PETSC_HAVE_MPI_IBARRIER)
        ierr = MPI_Ibarrier(comm,&barrier);CHKERRQ(ierr);
#elif defined(PETSC_HAVE_MPIX_IBARRIER)
        ierr = MPIX_Ibarrier(comm,&barrier);CHKERRQ(ierr);
#endif
        ierr = PetscFree(sendreqs);CHKERRQ(ierr);
      }
    } else {
      ierr = MPI_Test(&barrier,&done,MPI_STATUS_IGNORE);CHKERRQ(ierr);
    }
  }
  *nfrom = nrecvs;
  ierr   = PetscSegBufferExtractAlloc(segrank,fromranks);CHKERRQ(ierr);
  ierr   = PetscSegBufferDestroy(&segrank);CHKERRQ(ierr);
  ierr   = PetscSegBufferExtractAlloc(segdata,fromdata);CHKERRQ(ierr);
  ierr   = PetscSegBufferDestroy(&segdata);CHKERRQ(ierr);
  ierr   = PetscCommDestroy(&comm);CHKERRQ(ierr);
  PetscFunctionReturn(0);
}
Example #2
0
static PetscErrorCode PetscCommBuildTwoSidedFReq_Ibarrier(MPI_Comm comm,PetscMPIInt count,MPI_Datatype dtype,PetscMPIInt nto,const PetscMPIInt *toranks,const void *todata,
                                                          PetscMPIInt *nfrom,PetscMPIInt **fromranks,void *fromdata,PetscMPIInt ntags,MPI_Request **toreqs,MPI_Request **fromreqs,
                                                          PetscErrorCode (*send)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,PetscMPIInt,void*,MPI_Request[],void*),
                                                          PetscErrorCode (*recv)(MPI_Comm,const PetscMPIInt[],PetscMPIInt,void*,MPI_Request[],void*),void *ctx)
{
  PetscErrorCode ierr;
  PetscMPIInt    nrecvs,tag,*tags,done,i;
  MPI_Aint       lb,unitbytes;
  char           *tdata;
  MPI_Request    *sendreqs,*usendreqs,*req,barrier;
  PetscSegBuffer segrank,segdata,segreq;
  PetscBool      barrier_started;

  PetscFunctionBegin;
  ierr = PetscCommDuplicate(comm,&comm,&tag);CHKERRQ(ierr);
  ierr = PetscMalloc1(ntags,&tags);CHKERRQ(ierr);
  for (i=0; i<ntags; i++) {
    ierr = PetscCommGetNewTag(comm,&tags[i]);CHKERRQ(ierr);
  }
  ierr = MPI_Type_get_extent(dtype,&lb,&unitbytes);CHKERRQ(ierr);
  if (lb != 0) SETERRQ1(comm,PETSC_ERR_SUP,"Datatype with nonzero lower bound %ld\n",(long)lb);
  tdata = (char*)todata;
  ierr = PetscMalloc1(nto,&sendreqs);CHKERRQ(ierr);
  ierr = PetscMalloc1(nto*ntags,&usendreqs);CHKERRQ(ierr);
  /* Post synchronous sends */
  for (i=0; i<nto; i++) {
    ierr = MPI_Issend((void*)(tdata+count*unitbytes*i),count,dtype,toranks[i],tag,comm,sendreqs+i);CHKERRQ(ierr);
  }
  /* Post actual payloads.  These are typically larger messages.  Hopefully sending these later does not slow down the
   * synchronous messages above. */
  for (i=0; i<nto; i++) {
    PetscMPIInt k;
    for (k=0; k<ntags; k++) usendreqs[i*ntags+k] = MPI_REQUEST_NULL;
    ierr = (*send)(comm,tags,i,toranks[i],tdata+count*unitbytes*i,usendreqs+i*ntags,ctx);CHKERRQ(ierr);
  }

  ierr = PetscSegBufferCreate(sizeof(PetscMPIInt),4,&segrank);CHKERRQ(ierr);
  ierr = PetscSegBufferCreate(unitbytes,4*count,&segdata);CHKERRQ(ierr);
  ierr = PetscSegBufferCreate(sizeof(MPI_Request),4,&segreq);CHKERRQ(ierr);

  nrecvs  = 0;
  barrier = MPI_REQUEST_NULL;
  /* MPICH-3.2 sometimes does not create a request in some "optimized" cases.  This is arguably a standard violation,
   * but we need to work around it. */
  barrier_started = PETSC_FALSE;
  for (done=0; !done; ) {
    PetscMPIInt flag;
    MPI_Status  status;
    ierr = MPI_Iprobe(MPI_ANY_SOURCE,tag,comm,&flag,&status);CHKERRQ(ierr);
    if (flag) {                 /* incoming message */
      PetscMPIInt *recvrank,k;
      void        *buf;
      ierr = PetscSegBufferGet(segrank,1,&recvrank);CHKERRQ(ierr);
      ierr = PetscSegBufferGet(segdata,count,&buf);CHKERRQ(ierr);
      *recvrank = status.MPI_SOURCE;
      ierr = MPI_Recv(buf,count,dtype,status.MPI_SOURCE,tag,comm,MPI_STATUS_IGNORE);CHKERRQ(ierr);
      ierr = PetscSegBufferGet(segreq,ntags,&req);CHKERRQ(ierr);
      for (k=0; k<ntags; k++) req[k] = MPI_REQUEST_NULL;
      ierr = (*recv)(comm,tags,status.MPI_SOURCE,buf,req,ctx);CHKERRQ(ierr);
      nrecvs++;
    }
    if (!barrier_started) {
      PetscMPIInt sent,nsends;
      ierr = PetscMPIIntCast(nto,&nsends);CHKERRQ(ierr);
      ierr = MPI_Testall(nsends,sendreqs,&sent,MPI_STATUSES_IGNORE);CHKERRQ(ierr);
      if (sent) {
#if defined(PETSC_HAVE_MPI_IBARRIER)
        ierr = MPI_Ibarrier(comm,&barrier);CHKERRQ(ierr);
#elif defined(PETSC_HAVE_MPIX_IBARRIER)
        ierr = MPIX_Ibarrier(comm,&barrier);CHKERRQ(ierr);
#endif
        barrier_started = PETSC_TRUE;
      }
    } else {
      ierr = MPI_Test(&barrier,&done,MPI_STATUS_IGNORE);CHKERRQ(ierr);
    }
  }
  *nfrom = nrecvs;
  ierr = PetscSegBufferExtractAlloc(segrank,fromranks);CHKERRQ(ierr);
  ierr = PetscSegBufferDestroy(&segrank);CHKERRQ(ierr);
  ierr = PetscSegBufferExtractAlloc(segdata,fromdata);CHKERRQ(ierr);
  ierr = PetscSegBufferDestroy(&segdata);CHKERRQ(ierr);
  *toreqs = usendreqs;
  ierr = PetscSegBufferExtractAlloc(segreq,fromreqs);CHKERRQ(ierr);
  ierr = PetscSegBufferDestroy(&segreq);CHKERRQ(ierr);
  ierr = PetscFree(sendreqs);CHKERRQ(ierr);
  ierr = PetscFree(tags);CHKERRQ(ierr);
  ierr = PetscCommDestroy(&comm);CHKERRQ(ierr);
  PetscFunctionReturn(0);
}