C++ (Cpp) ModelObjectsTemp Examples

Example #1

File: ConnectivityRestraint.cpp Project: j-ma-bu-l-l-ock/imp

ModelObjectsTemp ConnectivityRestraint::do_get_inputs() const {
  if (!sc_) return ModelObjectsTemp();
  ModelObjectsTemp ret;
  ret += ps_->get_inputs(get_model(), sc_->get_all_possible_indexes());
  ret.push_back(sc_);
  return ret;
}

Example #2

File: SingleParticleScoringFunction.cpp Project: andreyto/imp-fork-proddl

ScoreStatesTemp
SingleParticleScoringFunction
::get_required_score_states(const DependencyGraph &dg,
                            const DependencyGraphVertexIndex &index) const {
  IMP_OBJECT_LOG;
  ScoreStatesTemp from_restraints
      =IMP::internal::RestraintsScoringFunction::get_required_score_states(dg,
                                                                        index);
  IMP_LOG(TERSE, "Score states from restraints are " << from_restraints
          << "(" << IMP::internal::RestraintsScoringFunction::get_restraints()
          << ")" << std::endl);
  ScoreStatesTemp from_dummy
      = IMP::get_required_score_states(dummy_restraints_, dg, index);
  IMP_LOG(TERSE, "Score states from dummy are " << from_dummy
          << "(" << dummy_restraints_ << ")" << std::endl);
  ScoreStatesTemp deps
      = IMP::get_dependent_score_states(get_model()->get_particle(pi_),
                                        ModelObjectsTemp(), dg, index);
  IMP_LOG(TERSE, "Dependent score states are " << deps << std::endl);
  std::sort(deps.begin(), deps.end());
  ScoreStatesTemp allin= from_restraints+from_dummy;
  std::sort(allin.begin(), allin.end());
  // intersect the lists to determine which depend on this particle and are need
  ScoreStatesTemp ret;
  std::set_intersection(allin.begin(), allin.end(),
                        deps.begin(), deps.end(),
                        std::back_inserter(ret));
  IMP_LOG(TERSE, "Particle " << Showable(get_model()->get_particle(pi_))
          << " will update " << get_ordered_score_states(ret) << std::endl);
  return get_ordered_score_states(ret);
}

Example #3

File: LogWrapper.cpp Project: AljGaber/imp

ModelObjectsTemp LogWrapper::do_get_inputs() const {
  return ModelObjectsTemp(restraints_begin(), restraints_end());
}

Example #4

File: StateAdaptor.cpp Project: j-ma-bu-l-l-ock/imp

ModelObjectsTemp StateAdaptor::do_get_inputs() const {
  return ModelObjectsTemp();
}

Example #5

File: swig.cpp Project: apolitis/imp

ModelObjectsTemp _ConstRestraint::do_get_inputs() const {
  return ModelObjectsTemp(ps_.begin(), ps_.end());
}

Example #6

File: Particle.cpp Project: andreyto/imp-fork-proddl

ModelObjectsTemp Particle::do_get_outputs() const {
  return ModelObjectsTemp();
}

Example #7

File: FixedRefiner.cpp Project: j-ma-bu-l-l-ock/imp

ModelObjectsTemp FixedRefiner::do_get_inputs(
    Model *, const ParticleIndexes &) const {
  return ModelObjectsTemp();
}

Example #8

File: ExampleConstraint.cpp Project: j-ma-bu-l-l-ock/imp

ModelObjectsTemp ExampleConstraint::do_get_outputs() const {
  return ModelObjectsTemp(1, p_);
}

Example #9

File: particle_states.cpp Project: j-ma-bu-l-l-ock/imp

ModelObjectsTemp DummyConstraint::do_get_outputs() const {
  return ModelObjectsTemp(out_.begin(), out_.end());
}

Example #10

File: WeightMover.cpp Project: AljGaber/imp

ModelObjectsTemp WeightMover::do_get_inputs() const {
  return ModelObjectsTemp(1, w_.get_particle());
}

Example #11

File: RigidBodyMover.cpp Project: AljGaber/imp

ModelObjectsTemp RigidBodyMover::do_get_inputs() const {
  return ModelObjectsTemp(1, get_model()->get_particle(pi_));
}

Example #12

File: MSConnectivityRestraint.cpp Project: j-ma-bu-l-l-ock/imp

ModelObjectsTemp MSConnectivityRestraint::do_get_inputs() const {
  if (!sc_) return ModelObjectsTemp();
  ModelObjectsTemp ret;
  IMP_CONTAINER_ACCESS(SingletonContainer, sc_,
  { ret += ps_->get_inputs(get_model(), imp_indexes); });

Example #13

File: MoveStatisticsScoreState.cpp Project: AljGaber/imp

ModelObjectsTemp MoveStatisticsScoreState::do_get_outputs() const {
  return ModelObjectsTemp();
}

Example #14

File: ExampleRestraint.cpp Project: AljGaber/imp

/* Return all particles whose attributes are read by the restraints. To
   do this, ask the pair score what particles it uses.*/
ModelObjectsTemp ExampleRestraint::do_get_inputs() const {
  return ModelObjectsTemp(1, get_model()->get_particle(p_));
}

Example #15

File: AllPairContainer.cpp Project: j-ma-bu-l-l-ock/imp

ModelObjectsTemp AllPairContainer::do_get_inputs() const {
  return ModelObjectsTemp(1, c_);
}

Example #16

File: ConstantRestraint.cpp Project: j-ma-bu-l-l-ock/imp

ModelObjectsTemp ConstantRestraint::do_get_inputs() const {
  return ModelObjectsTemp();
}

Example #17

File: particle_states.cpp Project: j-ma-bu-l-l-ock/imp

ModelObjectsTemp DummyConstraint::do_get_inputs() const {
  return ModelObjectsTemp(1, in_);
}