DEFINE_PLUGIN_PROTOTYPE
PLUGIN_interface * PLUGIN_init( int ncall )
{
PLUGIN_interface * plint ;
if( ncall > 0 ) return NULL ; /* only one interface */
CHECK_IF_ALLOWED("ROIAVERAGE","ROI Average") ; /* 30 Sep 2016 */
/*-- set titles and call point --*/
plint = PLUTO_new_interface( "ROI Average" , "Average Dataset over ROI" , helpstring ,
PLUGIN_CALL_VIA_MENU , MASKAVE_main ) ;
PLUTO_add_hint( plint , "Average Dataset over ROI" ) ;
PLUTO_set_sequence( plint , "A:afniinfo:dset" ) ;
/*-- first line of input --*/
PLUTO_add_option( plint , "Source" , "Source" , TRUE ) ;
PLUTO_add_dataset(plint , "Dataset" ,
ANAT_ALL_MASK , FUNC_ALL_MASK ,
DIMEN_ALL_MASK | BRICK_ALLREAL_MASK ) ;
PLUTO_add_number( plint , "Sub-brick" , -1,9999,0 , 0,1 ) ;
/*-- second line of input --*/
PLUTO_add_option( plint , "Mask" , "Mask" , TRUE ) ;
PLUTO_add_dataset( plint , "Dataset" ,
ANAT_ALL_MASK , FUNC_ALL_MASK ,
DIMEN_ALL_MASK | BRICK_ALLREAL_MASK ) ;
PLUTO_add_number( plint , "Sub-brick" , 0,9999,0 , 0,1 ) ; /* 06 Aug 1998 */
/*-- third line of input --*/
PLUTO_add_option( plint , "Range" , "Range" , FALSE ) ;
PLUTO_add_number( plint , "Bottom" , -99999,99999, 1, 0,1 ) ;
PLUTO_add_number( plint , "Top" , -99999,99999,-1, 0,1 ) ;
/*-- 4th line of input (06 Aug 1998) --*/
PLUTO_add_option( plint , "1D Save" , "1D Save" , FALSE ) ;
PLUTO_add_string( plint , "Name" , 0,NULL , 12 ) ;
PLUTO_add_string( plint , "To Disk?" , NUM_yesno_list , yesno_list , 1 ) ;
return plint ;
}
DEFINE_PLUGIN_PROTOTYPE
PLUGIN_interface * PLUGIN_init( int ncall )
{
PLUGIN_interface * plint ;
if( ncall > 0 ) return NULL ; /* only one interface */
/*-- set titles and call point --*/
plint = PLUTO_new_interface( "Dataset Rename" , "Dataset Renaming" , helpstring ,
PLUGIN_CALL_VIA_MENU , RENAME_main ) ;
PLUTO_add_hint( plint , "Rename a Dataset" ) ;
PLUTO_set_sequence( plint , "A:afnicontrol:dset" ) ;
PLUTO_set_runlabels( plint , "Rename+Keep" , "Rename+Close" ) ; /* 04 Nov 2003 */
/*-- first line of input: Dataset --*/
PLUTO_add_option( plint , "Input" , "Input" , TRUE ) ;
PLUTO_add_dataset(plint , "Dataset" ,
ANAT_ALL_MASK , FUNC_ALL_MASK ,
WARP_ON_DEMAND_MASK | DIMEN_ALL_MASK |
SESSION_ALL_MASK | BRICK_ALLTYPE_MASK ) ;
/*-- second line of input: Prefix for output dataset --*/
PLUTO_add_option( plint , "Output" , "Output" , TRUE ) ;
PLUTO_add_string( plint , "Prefix" , 0,NULL , 19 ) ;
return plint ;
}
DEFINE_PLUGIN_PROTOTYPE
PLUGIN_interface * PLUGIN_init( int ncall )
{
PLUGIN_interface * plint ;
static char *yn[2] = {"No", "Yes"};
if( ncall > 0 ) return NULL ; /* only one interface */
/*-- set titles and call point --*/
/* Initialize variables so we can be a 1D transformer*/
low_fc=0; high_fc = 0; ignore=1; autocorr=FALSE; retrend=FALSE; output_prefix=NULL; idc=NULL;
PLUTO_register_1D_function( "Fourier", fourier_1D );
plint = PLUTO_new_interface( "Fourier Stuff" , "Filtering, autocorrelation and other stuff done with FFTs" , helpstring ,
PLUGIN_CALL_VIA_MENU , Fourier_Main ) ;
PLUTO_add_hint( plint , "Filtering, autocorrelation and other stuff done with FFTs" ) ;
PLUTO_set_sequence( plint , "z:Ross" ) ;
/*-- first line of input: Dataset --*/
PLUTO_add_option( plint , "Input" , "Input" , FALSE ) ;
PLUTO_add_dataset(plint , "Dataset" ,
ANAT_ALL_MASK , FUNC_ALL_MASK ,
DIMEN_4D_MASK | BRICK_ALLREAL_MASK ) ;
/*-- second line of input: Prefix for output dataset --*/
PLUTO_add_option( plint , "Output" , "Output" , FALSE ) ;
PLUTO_add_string( plint , "Prefix" , 0, NULL , 19 ) ;
/*-- third line of input: Preprocessing --*/
PLUTO_add_option( plint , "Preprocess" , "Preprocess" , TRUE ) ;
PLUTO_add_number( plint , "Ignore" , 0, 10, 0, 1 , FALSE) ;
PLUTO_add_string( plint, "Re-trend", 2, yn, 0);
/*-- fourth line of input: Lowpass option --*/
PLUTO_add_option( plint , "Lowpass" , "Lowpass" , FALSE ) ;
PLUTO_add_number( plint , "Fc" , 0, 5000, 3, 0 , TRUE) ;
/*-- fifth line of input: Highass option --*/
PLUTO_add_option( plint , "Highpass" , "Highpass" , FALSE ) ;
PLUTO_add_number( plint , "Fc" , 0, 5000, 3, 0 , TRUE) ;
/*-- sixt line of input: Autocorrelation option --*/
/*
PLUTO_add_option( plint , "Autocorrelate" , "Autocorrelate" , FALSE ) ;
*/
return plint ;
}
DEFINE_PLUGIN_PROTOTYPE
PLUGIN_interface * PLUGIN_init( int ncall )
{
PLUGIN_interface * plint ;
if( ncall > 0 ) return NULL ; /* only one interface */
CHECK_IF_ALLOWED("HEMISUBTRACT","Hemi-subtract") ; /* 30 Sep 2016 */
/* create the new interface */
plint = PLUTO_new_interface( "Hemi-subtract", "hemisphere subtraction",
helpstring, PLUGIN_CALL_VIA_MENU , HEMISUB_main );
PLUTO_add_hint( plint,
"from each voxel's value, subtract that of the reflected voxel" );
PLUTO_set_sequence( plint , "z:Reynolds" ) ;
/*-- first line of input: input dataset --*/
PLUTO_add_option( plint, "Input" , "Input" , TRUE );
PLUTO_add_hint( plint, "choose dataset for input" );
PLUTO_add_dataset(plint, "Dataset" , ANAT_ALL_MASK , FUNC_ALL_MASK,
DIMEN_3D_MASK | BRICK_SHORT_MASK );
/*-- second line of input: prefix for output dataset --*/
PLUTO_add_option( plint, "Output" , "prefix" , TRUE );
PLUTO_add_hint( plint, "option: choose dataset prefix for output" );
PLUTO_add_string( plint, "Prefix", 0, NULL, 19 );
/*-- third line of input: threshold type option --*/
PLUTO_add_option( plint, "Thresh Type", "Thresh Type", FALSE );
PLUTO_add_string( plint, "Type", NUM_T_OPTS, thresh_opts, 0 );
return plint;
}
DEFINE_PLUGIN_PROTOTYPE
PLUGIN_interface * PLUGIN_init( int ncall )
{
PLUGIN_interface * plint ; /* will be the output of this routine */
if( ncall > 0 ) return NULL ; /* one interfaces */
/*---------------- set titles and call point ----------------*/
plint = PLUTO_new_interface( "SingleTrial Avg" ,
"Averaging of epochs in Single Trial data" ,
helpstring ,
PLUGIN_CALL_VIA_MENU , STAVG_main ) ;
PLUTO_add_hint( plint , "Averaging of epochs in Single Trial data" ) ;
global_plint = plint ; /* make global copy */
PLUTO_set_sequence( plint , "z:Birn" ) ;
/*--------- 1st line ---------*/
PLUTO_add_option( plint ,
"Datasets" , /* label at left of input line */
"Datasets" , /* tag to return to plugin */
TRUE /* is this mandatory? */
) ;
PLUTO_add_dataset( plint ,
"Input" , /* label next to button */
ANAT_ALL_MASK , /* take any anat datasets */
FUNC_FIM_MASK , /* only allow fim funcs */
DIMEN_4D_MASK | /* need 3D+time datasets */
BRICK_ALLREAL_MASK /* need real-valued datasets */
) ;
PLUTO_add_hint( plint , "Input 3d+t dataset" ) ;
PLUTO_add_string( plint ,
"Output" , /* label next to textfield */
0,NULL , /* no fixed strings to choose among */
19 /* 19 spaces for typing in value */
) ;
PLUTO_add_hint( plint , "Name of output dataset" ) ;
/*---------- 2nd line --------*/
PLUTO_add_option( plint ,
"Timing" ,
"Timing" ,
TRUE
) ;
PLUTO_add_timeseries(plint, "Stim. Timing");
PLUTO_add_hint( plint , "Stimulus Timing (0 = no task, 1 = task)" ) ;
PLUTO_add_number( plint ,
"delta" ,
-1000 ,
1000 ,
0 ,
0 ,
TRUE
) ;
PLUTO_add_hint( plint , "Shift data timecourse by delta before splitting and averaging" ) ;
/*---------- 3rd line: computation ----------*/
PLUTO_add_option( plint ,
"Compute" , /* label at left of input line */
"Compute" , /* tag to return to plugin */
TRUE /* is this mandatory? */
) ;
PLUTO_add_string( plint ,
"Method" , /* label next to chooser button */
_STAVG_NUM_METHODS, /* number of strings in list */
method_strings , /* list of strings to choose among */
_STAVG_METH_MEAN /* index of default string */
) ;
PLUTO_add_hint( plint , "Choose statistic to compute" ) ;
/*---------- 4th line --------*/
PLUTO_add_option( plint ,
"Parameters" , /* label at left of input line */
"Parameters" , /* tag to return to plugin */
FALSE /* is this mandatory? */
) ;
PLUTO_add_number( plint ,
"maxlength" , /* label next to chooser */
0 , /* smallest possible value */
1000 , /* largest possible value */
0 , /* decimal shift (none in this case) */
15 , /* default value */
TRUE /* allow user to edit value? */
) ;
PLUTO_add_hint( plint , "maximum # of timepoints of output dataset" ) ;
PLUTO_add_string( plint ,
"no1?" , /* label next to chooser button */
2 , /* number of strings to choose among */
yes_no_strings , /* list of strings to choose among */
1 /* index of default string */
) ;
PLUTO_add_hint( plint , "ignore timepoints where only one image is in average" ) ;
/*--------- done with interface setup ---------*/
return plint ;
}
DEFINE_PLUGIN_PROTOTYPE
PLUGIN_interface * PLUGIN_init( int ncall )
{
PLUGIN_interface * plint ; /* will be the output of this routine */
if( ncall > 0 ) return NULL ; /* only one interface */
CHECK_IF_ALLOWED("3DEXTRACT","3D+t Extract") ; /* 30 Sep 2016 */
/*---------------- set titles and call point ----------------*/
plint = PLUTO_new_interface( "3D+t Extract" ,
"Extract voxel time courses given their index or XYZ coordinates" ,
helpstring ,
PLUGIN_CALL_VIA_MENU , EXTRACT_main ) ;
global_plint = plint ; /* make global copy */
/*--------- 1st line: Input dataset and mask files ---------*/
PLUTO_add_option( plint ,
"Data" , /* label at left of input line */
"Data" , /* tag to return to plugin */
TRUE /* is this mandatory? */
) ;
PLUTO_add_dataset( plint ,
"3D+time" , /* label next to button */
ANAT_ALL_MASK , /* take only EPI datasets */
FUNC_ALL_MASK , /* No fim funcs */
DIMEN_4D_MASK | /* need 3D+time datasets */
BRICK_ALLREAL_MASK /* need real-valued datasets */
) ;
PLUTO_add_number( plint ,
"Ignore" , /* label next to chooser */
0 , /* smallest possible value */
50 , /* largest possible value (inactivated for now)*/
0 , /* decimal shift (none in this case) */
0 , /* default value */
FALSE /* allow user to edit value? */
) ;
PLUTO_add_string( plint ,
"Dtrnd" , /* label next to textfield */
2,yn_strings, /* strings to choose among */
1 /* Default option */
) ;
/*---------- 2nd line: Mask file info ----------*/
PLUTO_add_option( plint ,
"Mask file" , /* label at left of input line */
"Mask" , /* tag to return to plugin */
TRUE /* is this mandatory? */
) ;
PLUTO_add_string( plint , "Mask File" , 0 , NULL , 19 ) ;
PLUTO_add_number( plint ,
"N Columns" , /* label next to chooser */
1 , /* smallest possible value */
1000 , /* largest possible value (inactivated for now)*/
0 , /* decimal shift (none in this case) */
3 , /* default value */
TRUE /* allow user to edit value? */
) ;
PLUTO_add_number( plint ,
"Pass Value" , /* label next to chooser */
-10000 , /* smallest possible value */
10000 , /* largest possible value (inactivated for now)*/
0 , /* decimal shift (none in this case) */
1 , /* default value */
TRUE /* allow user to edit value? */
) ;
/*---------- 3rd line: index mask location ----------*/
PLUTO_add_option( plint ,
"Index Mask ?" , /* label at left of input line */
"Index" , /* tag to return to plugin */
FALSE /* is this mandatory? */
) ;
PLUTO_add_number( plint ,
"i col." , /* label next to chooser */
1 , /* smallest possible value */
1000 , /* largest possible value (inactivated for now)*/
0 , /* decimal shift (none in this case) */
1 , /* default value */
TRUE /* allow user to edit value? */
) ;
/*---------- 4th line: xyz mask location ----------*/
PLUTO_add_option( plint ,
"XYZ Mask ?" , /* label at left of input line */
"XYZ" , /* tag to return to plugin */
FALSE /* is this mandatory? */
) ;
PLUTO_add_number( plint ,
"x col." , /* label next to chooser */
1 , /* smallest possible value */
1000 , /* largest possible value */
0 , /* decimal shift (none in this case) */
2 , /* default value */
TRUE /* allow user to edit value? */
) ;
PLUTO_add_number( plint ,
"y col." , /* label next to chooser */
1 , /* smallest possible value */
1000 , /* largest possible value */
0 , /* decimal shift (none in this case) */
3 , /* default value */
TRUE /* allow user to edit value? */
) ;
PLUTO_add_number( plint ,
"z col." , /* label next to chooser */
1 , /* smallest possible value */
1000 , /* largest possible value */
0 , /* decimal shift (none in this case) */
4 , /* default value */
TRUE /* allow user to edit value? */
) ;
/*---------- 5th line: output stuff ----------*/
PLUTO_add_option( plint ,
"Output" , /* label at left of input line */
"Output" , /* tag to return to plugin */
TRUE /* is this mandatory? */
) ;
PLUTO_add_string( plint ,
"AFNI Prfx" , /* label next to textfield */
0,NULL , /* no fixed strings to choose among */
19 /* 19 spaces for typing in value */
) ;
PLUTO_add_string( plint , "Filename" , 0 , NULL , 19 ) ;
PLUTO_add_string( plint ,
"Format" , /* label next to textfield */
2,format_strings, /* strings to choose among */
0 /* Default option */
) ;
return plint ;
}
PLUGIN_interface * PLUGIN_init( int ncall )
{
PLUGIN_interface * plint ; /* will be the output of this routine */
if( ncall > 1 ) return NULL ; /* two interfaces */
CHECK_IF_ALLOWED("ASL","ASL a3/d3") ; /* 30 Sep 2016 */
#ifdef ALLOW_TESTING
if( ncall == 1 ) return TEST_init() ;
#else
if( ncall == 1 ) return NULL ;
#endif
/*---------------- set titles and call point ----------------*/
plint = PLUTO_new_interface( "ASL a3/d3" ,
"ASL a3/d3 of a 3D+time Dataset" ,
helpstring ,
PLUGIN_CALL_VIA_MENU , POWER_main ) ;
PLUTO_add_hint( plint , "ASL a3/d3 of a 3D+time Dataset" ) ;
PLUTO_set_sequence( plint , "A:newdset:statistics" ) ;
/*--------- 1st line: Input dataset ---------*/
PLUTO_add_option( plint ,
"Input" , /* label at left of input line */
"Input" , /* tag to return to plugin */
TRUE /* is this mandatory? */
) ;
PLUTO_add_dataset( plint ,
"---->>" , /* label next to button */
ANAT_ALL_MASK , /* take any anat datasets */
FUNC_FIM_MASK , /* only allow fim funcs */
DIMEN_4D_MASK | /* need 3D+time datasets */
BRICK_ALLREAL_MASK /* need real-valued datasets */
) ;
/*---------- 2nd line: Output dataset ----------*/
PLUTO_add_option( plint ,
"Output" , /* label at left of input line */
"Output" , /* tag to return to plugin */
TRUE /* is this mandatory? */
) ;
PLUTO_add_string( plint ,
"Prefix" , /* label next to textfield */
0,NULL , /* no fixed strings to choose among */
19 /* 19 spaces for typing in value */
) ;
PLUTO_add_string( plint ,
"Datum" , /* label next to chooser button */
NUM_TYPE_STRINGS , /* number of strings to choose among */
type_strings , /* list of strings to choose among */
0 /* index of default string */
) ;
/*--------- Other lines: Parameters ---------*/
PLUTO_add_option( plint , "Ignore" , "Ignore" , TRUE ) ;
PLUTO_add_number( plint ,
"Count" , /* label next to chooser */
0 , /* smallest possible value */
999 , /* largest possible value */
0 , /* decimal shift (none in this case) */
4 , /* default value */
TRUE /* allow user to edit value? */
) ;
PLUTO_add_string( plint ,
"Image Output" , /* label next to chooser button */
NUM_TYPE_STRINGSX , /* number of strings to choose among */
type_stringsx , /* list of strings to choose among */
0 /* index of default string */
) ;
PLUTO_add_option( plint , "Scale" , "Scale" , TRUE ) ;
PLUTO_add_number( plint ,
"Scale Factor" , /* label next to chooser */
0 , /* smallest possible value */
999 , /* largest possible value */
0 , /* decimal shift (none in this case) */
1 , /* default value */
TRUE /* allow user to edit value? */
) ;
return plint ;
}
DEFINE_PLUGIN_PROTOTYPE
PLUGIN_interface * PLUGIN_init( int ncall )
{
PLUGIN_interface * plint ;
/*----- plugin option labels -----*/ /* 19 June 1998 */
char * boolean_types[2] = {"False", "True"};
char * cluster_types[7] = {"Keep", "Mean", "Max", "AMax", "SMax", "Size",
"Order"};
if( ncall > 0 ) return NULL ; /* only one interface */
/*-- set titles and call point --*/
plint = PLUTO_new_interface( "3D Cluster" , "Dataset Clustering" , helpstring ,
PLUGIN_CALL_VIA_MENU , CLUST_main ) ;
PLUTO_add_hint( plint , "Dataset Clustering" ) ;
PLUTO_set_sequence( plint , "A:afniinfo:dsetcluster" ) ;
/*-- first line of input: Dataset --*/
PLUTO_add_option( plint , "Dataset" , "Dataset" , TRUE ) ;
PLUTO_add_dataset(plint , "Function" ,
ANAT_ALL_MASK , FUNC_ALL_MASK ,
DIMEN_3D_MASK | BRICK_ALLREAL_MASK ) ;
PLUTO_add_hint( plint , "Choose input dataset" ) ;
/*-- second line of input: Cluster Parameters --*/
PLUTO_add_option( plint , "Params" , "Params" , TRUE ) ;
PLUTO_add_hint( plint , "Find and reject small clusters" ) ;
PLUTO_add_string (plint, "Type", 7, cluster_types, 0); /* 19 June 1998 */
PLUTO_add_hint( plint , "How to process data inside clusters" ) ;
PLUTO_add_number( plint , "Radius(mm)" , 0, 100,1 , 20,TRUE ) ;
PLUTO_add_hint( plint , "Max distance between 'neighbors'" ) ;
PLUTO_add_number( plint , "MinVol(ul)" , 0,1000,-1,100,TRUE ) ;
PLUTO_add_hint( plint , "Min size for cluster to survive" ) ;
/*---- 3rd line of input: Erosion/Dilation option ----*/ /* 19 June 1998 */
PLUTO_add_option (plint, "Erode/Dilate", "Erode/Dilate", FALSE);
PLUTO_add_hint (plint , "Sever narrow connecting paths between clusters");
PLUTO_add_number (plint, "% Voxels", 0, 100, 0, 50, TRUE);
PLUTO_add_hint (plint ,
"Min % of active 'neighbors' for a voxel to survive");
PLUTO_add_string (plint, "Dilate?", 2, boolean_types, 0);
PLUTO_add_hint (plint , "Restore voxels near main body of cluster");
/*-- fourth line of input: Threshold (optional) --*/
PLUTO_add_option( plint , "Threshold" , "Threshold" , FALSE ) ;
PLUTO_add_hint( plint , "Zero out if threshold brick too small" ) ;
PLUTO_add_number( plint , "Cutoff" , 0,1000,2 , 50,TRUE ) ;
PLUTO_add_hint( plint , "Threshold values < this => 0" ) ;
/*-- fifth line of input: Prefix for output dataset --*/
PLUTO_add_option( plint , "Output" , "Output" , FALSE ) ;
PLUTO_add_string( plint , "Prefix" , 0,NULL , 19 ) ;
PLUTO_add_hint( plint , "Name output dataset" ) ;
return plint ;
}
DEFINE_PLUGIN_PROTOTYPE
PLUGIN_interface * PLUGIN_init(int ncall)
{
PLUGIN_interface * plint ;
if( ncall > 0 ) return NULL ; /* only one interface */
/*-- set titles and call point --*/
plint = PLUTO_new_interface( "Histogram: BFit" ,
"Betafit Histogram" ,
helpstring ,
PLUGIN_CALL_VIA_MENU , BFIT_main ) ;
PLUTO_add_hint( plint , "Histogram: Betafit" ) ;
PLUTO_set_sequence( plint , "A:afniinfo:dsethistog" ) ;
/*-- first line of input --*/
PLUTO_add_option( plint , "Source" , "Source" , TRUE ) ;
PLUTO_add_dataset( plint ,
"Dataset" , /* label next to button */
ANAT_ALL_MASK , /* take any anat datasets */
FUNC_ALL_MASK , /* only allow fim funcs */
DIMEN_3D_MASK | /* need 3D+time datasets */
BRICK_ALLREAL_MASK /* need real-valued datasets */
) ;
PLUTO_add_number( plint , "Brick" , 0,9999,0, 0,1 ) ;
PLUTO_add_string( plint , "Square" , NYESNO , YESNO_strings , 1 ) ;
/*-- second line of input --*/
PLUTO_add_option( plint , "a Params" , "Params" , TRUE ) ;
PLUTO_add_number( plint , "a bot" , 2,50 ,1 , 5 , 1 ) ;
PLUTO_add_number( plint , "a top" , 2,500,1 , 20 , 1 ) ;
PLUTO_add_option( plint , "b Params" , "Params" , TRUE ) ;
PLUTO_add_number( plint , "b bot" , 10,400 ,0 , 10 , 1 ) ;
PLUTO_add_number( plint , "b top" , 10,9999,0 , 200 , 1 ) ;
PLUTO_add_number( plint , "H last", 0,1000,-1 , 0,1 ) ;
PLUTO_add_option( plint , "Misc" , "Params" , TRUE ) ;
PLUTO_add_number( plint , "N ran" , 10,1000,-2 , 100 , 1 ) ;
PLUTO_add_number( plint , "% cut" , 20,90,0 , 70,1 ) ;
PLUTO_add_string( plint , "HSqrt" , NYESNO , YESNO_strings , 0 ) ;
/*-- (optional) line of input --*/
PLUTO_add_option( plint , "Mask" , "Mask" , FALSE ) ;
PLUTO_add_dataset( plint , "Dataset" ,
ANAT_ALL_MASK , FUNC_ALL_MASK ,
DIMEN_ALL_MASK | BRICK_ALLREAL_MASK ) ;
PLUTO_add_number( plint , "Brick" , 0,9999,0 , 0,1 ) ;
/*-- (optional) line of input --*/
PLUTO_add_option( plint , "Range" , "Range" , FALSE ) ;
PLUTO_add_number( plint , "Bottom" , -99999,99999, 1, 0,1 ) ;
PLUTO_add_number( plint , "Top" , -99999,99999,-1, 0,1 ) ;
/*-- (optional) line of input --*/
PLUTO_add_option( plint , "Extra" , "Extra" , FALSE ) ;
PLUTO_add_number( plint , "a" , 2,50,1 , 5 , 1 ) ;
PLUTO_add_number( plint , "b" , 10,999,0 , 200 , 1 ) ;
return plint ;
}
DEFINE_PLUGIN_PROTOTYPE
PLUGIN_interface * PLUGIN_init( int ncall )
{
PLUGIN_interface * plint ; /* will be the output of this routine */
if( ncall > 0 ) return NULL ; /* only one interface */
/*---------------- set titles and call point ----------------*/
plint = PLUTO_new_interface( "Hilbert Delay98" ,
"Time delay between FMRI and reference time series" ,
helpstring ,
PLUGIN_CALL_VIA_MENU , DELAY_main ) ;
global_plint = plint ; /* make global copy */
/*--------- 1st line: Input dataset ---------*/
PLUTO_add_option( plint ,
"Data" , /* label at left of input line */
"Data" , /* tag to return to plugin */
TRUE /* is this mandatory? */
) ;
PLUTO_add_dataset( plint ,
"3D+time" , /* label next to button */
ANAT_ALL_MASK , /* take only EPI datasets */
FUNC_ALL_MASK , /* No fim funcs */
DIMEN_4D_MASK | /* need 3D+time datasets */
BRICK_ALLREAL_MASK /* need real-valued datasets */
) ;
PLUTO_add_number( plint ,
"Nort" , /* label next to chooser */
1 , /* smallest possible value */
100 , /* largest possible value (inactivated for now)*/
0 , /* decimal shift (none in this case) */
2 , /* default value */
FALSE /* allow user to edit value? */
) ;
/*---------- 2nd line: Input time series ----------*/
PLUTO_add_option( plint ,
"Ref." , /* label at left of input line */
"Ref." , /* tag to return to plugin */
TRUE /* is this mandatory? */
) ;
PLUTO_add_timeseries(plint,"Ref. Vect.");
PLUTO_add_number( plint ,
"Ignore" , /* label next to chooser */
0 , /* smallest possible value */
50 , /* largest possible value (inactivated for now)*/
0 , /* decimal shift (none in this case) */
0 , /* default value */
FALSE /* allow user to edit value? */
) ;
PLUTO_add_string( plint ,
"Dsamp" , /*label next to textfield */
2,yn_strings, /* strings to choose among */
1 /* Default option */
) ;
/*---------- 3rd line: sampling frequency ----------*/
PLUTO_add_option( plint ,
"Sig." , /* label at left of input line */
"Sig." , /* tag to return to plugin */
TRUE /* is this mandatory? */
) ;
PLUTO_add_number( plint ,
"fs in Hz" , /* label next to chooser */
0 , /* smallest possible value */
2000 , /* largest possible value */
1 , /* decimal shift (none in this case) */
5 , /* default value */
TRUE /* allow user to edit value? */
) ;
PLUTO_add_number( plint ,
"Tstim sec" , /* label next to chooser */
0.0 , /* smallest possible value */
500 , /* largest possible value */
0 , /* decimal shift (none in this case) */
40 , /* default value */
TRUE /* allow user to edit value? */
) ;
PLUTO_add_number( plint ,
"C-Off" , /* label next to chooser */
-10 , /* smallest possible value */
10 , /* largest possible value */
1 , /* decimal shift */
5 , /* default value */
TRUE /* allow user to edit value? */
) ;
PLUTO_add_string( plint ,
"No-bias" , /*label next to textfield */
2,yn_strings, /* strings to choose among */
1 /* Default option */
) ;
/*---------- 4th line: Delay Units ----------*/
PLUTO_add_option( plint ,
"Alg." , /* label at left of input line */
"Alg." , /* tag to return to plugin */
TRUE /* is this mandatory? */
) ;
PLUTO_add_number( plint ,
"N seg." , /* label next to chooser */
1 , /* smallest possible value */
1 , /* largest possible value (turned Off for the moment, supporting code is present)*/
0 , /* decimal shift (none in this case) */
1 , /* default value */
FALSE /* allow user to edit value? */
) ;
PLUTO_add_number( plint ,
"% ovrlp" , /* label next to chooser */
0 , /* smallest possible value */
0 , /* largest possible value (not implemented)*/
0 , /* decimal shift (none in this case) */
0 , /* default value */
FALSE /* allow user to edit value? */
) ;
PLUTO_add_string( plint ,
"Units" , /* label next to textfield */
3,method_strings, /* strings to choose among */
0 /* Default option */
) ;
PLUTO_add_string( plint ,
"Phz Wrp" , /* label next to textfield */
2,yn_strings, /* strings to choose among */
0 /* Default option */
) ;
/*---------- 5th line: Output dataset ----------*/
PLUTO_add_option( plint ,
"Output" , /* label at left of input line */
"Output" , /* tag to return to plugin */
TRUE /* is this mandatory? */
) ;
PLUTO_add_string( plint ,
"AFNI Prfx" , /* label next to textfield */
0,NULL , /* no fixed strings to choose among */
19 /* 19 spaces for typing in value */
) ;
PLUTO_add_string( plint ,
"Write" , /* label next to textfield */
2,yn_strings ,
1
) ;
PLUTO_add_string( plint , "Filename" , 0 , NULL , 19 ) ;
PLUTO_add_string( plint ,
"Write ts" , /* label next to textfield */
2,yn_strings ,
1
) ;
/*--------- done with interface setup ---------*/
return plint ;
}
DEFINE_PLUGIN_PROTOTYPE
PLUGIN_interface * PLUGIN_init( int ncall )
{
PLUGIN_interface * plint ; /* will be the output of this routine */
if( ncall > 0 ) return NULL ; /* only one interface */
CHECK_IF_ALLOWED("2DREGISTRATION","2D Registration") ; /* 30 Sep 2016 */
/*---------------- set titles and call point ----------------*/
plint = PLUTO_new_interface( "2D Registration" ,
"2D Registration of a 3D+time Dataset" ,
helpstring ,
PLUGIN_CALL_VIA_MENU , IMREG_main ) ;
PLUTO_add_hint( plint , "2D Registration of a 3D+time Dataset" ) ;
global_plint = plint ; /* make global copy */
PLUTO_set_sequence( plint , "A:newdset:reg" ) ;
/*--------- 1st line ---------*/
PLUTO_add_option( plint ,
"Datasets" , /* label at left of input line */
"DAtasets" , /* tag to return to plugin */
TRUE /* is this mandatory? */
) ;
PLUTO_add_dataset( plint ,
"Input" , /* label next to button */
ANAT_ALL_MASK , /* take any anat datasets */
FUNC_FIM_MASK , /* only allow fim funcs */
DIMEN_4D_MASK | /* need 3D+time datasets */
BRICK_ALLREAL_MASK /* need real-valued datasets */
) ;
PLUTO_add_string( plint ,
"Output" , /* label next to textfield */
0,NULL , /* no fixed strings to choose among */
19 /* 19 spaces for typing in value */
) ;
/*---------- 2nd line --------*/
PLUTO_add_option( plint ,
"Parameters" , /* label at left of input line */
"Parameters" , /* tag to return to plugin */
TRUE /* is this mandatory? */
) ;
PLUTO_add_number( plint ,
"Base" , /* label next to chooser */
0 , /* smallest possible value */
98 , /* largest possible value */
0 , /* decimal shift (none in this case) */
3 , /* default value */
FALSE /* allow user to edit value? */
) ;
/*---------- 3rd line --------*/
PLUTO_add_option( plint ,
"Fine Fit" ,
"Fine Fit" ,
FALSE
) ;
PLUTO_add_number( plint , "Blur" , 0 , 40 , 1 , 10 , FALSE ) ;
PLUTO_add_number( plint , "Dxy" , 1 , 20 , 2 , 7 , FALSE ) ;
PLUTO_add_number( plint , "Dphi" , 1 , 50 , 2 , 21 , FALSE ) ;
/*--------- done with interface setup ---------*/
return plint ;
}
