C++ (Cpp) ReadSeqAnnot Examples

Example #1

File: vcf_reader.cpp Project: swuecho/igblast

//  ----------------------------------------------------------------------------                
CRef< CSerialObject >
CVcfReader::ReadObject(
    ILineReader& lr,
    IMessageListener* pMessageListener ) 
//  ----------------------------------------------------------------------------                
{ 
    CRef<CSerialObject> object( 
        ReadSeqAnnot( lr, pMessageListener ).ReleaseOrNull() );    
    return object;
}

Example #2

//  ----------------------------------------------------------------------------                
CRef< CSerialObject >
CWiggleReader::ReadObject(
    ILineReader& lr,
    IErrorContainer* pErrorContainer ) 
//  ----------------------------------------------------------------------------                
{ 
    CRef<CSerialObject> object( 
        ReadSeqAnnot( lr, pErrorContainer ).ReleaseOrNull() );
    return object; 
}

Example #3

File: vcf_reader.cpp Project: swuecho/igblast

//  ---------------------------------------------------------------------------                       
void
CVcfReader::ReadSeqAnnots(
    vector< CRef<CSeq_annot> >& annots,
    ILineReader& lr,
    IMessageListener* pMessageListener )
//  ----------------------------------------------------------------------------
{
    while ( ! lr.AtEOF() ) {
        CRef<CSeq_annot> pAnnot = ReadSeqAnnot( lr, pMessageListener );
        if ( pAnnot ) {
            annots.push_back( pAnnot );
        }
    }
}

Example #4

//  ---------------------------------------------------------------------------                       
void
CWiggleReader::ReadSeqAnnots(
    vector< CRef<CSeq_annot> >& annots,
    ILineReader& lr,
    IErrorContainer* pErrorContainer )
//  ----------------------------------------------------------------------------
{
    while ( ! lr.AtEOF() ) {
        CRef<CSeq_annot> pAnnot = ReadSeqAnnot( lr, pErrorContainer );
        if ( pAnnot ) {
            annots.push_back( pAnnot );
        }
    }
}

Example #5

File: ucscregion_reader.cpp Project: svn2github/ncbi_tk

//  ----------------------------------------------------------------------------
CRef<CSerialObject> CUCSCRegionReader::ReadObject(ILineReader& lr, ILineErrorListener* pErrors)
{
    CRef<CSeq_annot> annot = ReadSeqAnnot(lr, pErrors);
    return CRef<CSerialObject>(annot);
}