static int fastqtobampar(libmaus2::util::ArgInfo const & arginfo)
{
std::ostream & out = std::cout;
uint64_t const numlogcpus = arginfo.getValue<int>("threads",libmaus2::parallel::NumCpus::getNumLogicalProcessors());
int const level = arginfo.getValue<int>("level",Z_DEFAULT_COMPRESSION);
std::string const rgid = writeHeader(arginfo,out);
libmaus2::parallel::SimpleThreadPool STP(numlogcpus);
uint64_t const outblocks = 1024;
uint64_t const inputblocksize = 1024*1024*64;
uint64_t const inblocks = 64;
libmaus2::aio::PosixFdInputStream PFIS(STDIN_FILENO);
libmaus2::bambam::parallel::FastqToBamControl FTBC(PFIS,out,STP,inblocks,inputblocksize,outblocks,level,rgid);
FTBC.enqueReadPackage();
FTBC.waitCompressionFinished();
STP.terminate();
STP.join();
return EXIT_SUCCESS;
}
float Det3x3(matrix4x4 val)
{
return STP(val[0],val[1],val[2]);
}
