C++ (Cpp) SegParametersFree Examples

Example #1

File: blast_filter.c Project: fast-project/mpifast

Int2
BlastSetUp_Filter(EBlastProgramType program_number, 
                  Uint1* sequence, 
                  Int4 length, 
                  Int4 offset, 
                  const SBlastFilterOptions* filter_options, 
                  BlastSeqLoc** seqloc_retval, 
                  Blast_Message* *blast_message)
{
	Int2 status=0;		/* return value. */

    ASSERT(filter_options);
    ASSERT(seqloc_retval);

    *seqloc_retval = NULL;

    status = SBlastFilterOptionsValidate(program_number, filter_options, 
                                         blast_message);
    if (status)
       return status;

	if (filter_options->segOptions)
	{
        SSegOptions* seg_options = filter_options->segOptions;
        SegParameters* sparamsp=NULL;

        sparamsp = SegParametersNewAa();
        sparamsp->overlaps = TRUE;
        if (seg_options->window > 0)
            sparamsp->window = seg_options->window;
        if (seg_options->locut > 0.0)
            sparamsp->locut = seg_options->locut;
        if (seg_options->hicut > 0.0)
            sparamsp->hicut = seg_options->hicut;

		status = SeqBufferSeg(sequence, length, offset, sparamsp, 
                              seqloc_retval);
		SegParametersFree(sparamsp);
		sparamsp = NULL;
	}

	return status;
}

Example #2

File: segmask.cpp Project: DmitrySigaev/ncbi

CSegMasker::~CSegMasker()
{
    SegParametersFree(m_SegParameters);
}